aboutsummaryrefslogtreecommitdiff
path: root/wqflask/utility
diff options
context:
space:
mode:
Diffstat (limited to 'wqflask/utility')
-rw-r--r--wqflask/utility/tools.py10
1 files changed, 3 insertions, 7 deletions
diff --git a/wqflask/utility/tools.py b/wqflask/utility/tools.py
index d4c10c68..0f2e4d88 100644
--- a/wqflask/utility/tools.py
+++ b/wqflask/utility/tools.py
@@ -1,9 +1,5 @@
# Tools/paths finder resolves external paths from settings and/or environment
# variables
-#
-# Currently supported:
-#
-# PYLMM_PATH finds the root of the git repository of the pylmm_gn2 tool
import os
import sys
@@ -69,13 +65,13 @@ def valid_path(dir):
return None
def pylmm_command(guess=None):
- return valid_bin(get_setting("PYLMM_RUN",guess))
+ return valid_bin(get_setting("PYLMM_COMMAND",guess))
def gemma_command(guess=None):
- return valid_bin(get_setting("GEMMA_RUN",guess))
+ return valid_bin(get_setting("GEMMA_COMMAND",guess))
def plink_command(guess=None):
- return valid_bin(get_setting("PLINK_RUN",guess))
+ return valid_bin(get_setting("PLINK_COMMAND",guess))
def flat_files(subdir=None):
base = get_setting("GENENETWORK_FILES")