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-rw-r--r--[-rwxr-xr-x]wqflask/utility/Plot.py352
1 files changed, 175 insertions, 177 deletions
diff --git a/wqflask/utility/Plot.py b/wqflask/utility/Plot.py
index 51a57a6d..ad11a81e 100755..100644
--- a/wqflask/utility/Plot.py
+++ b/wqflask/utility/Plot.py
@@ -24,10 +24,9 @@
#
# Last updated by GeneNetwork Core Team 2010/10/20
-#import piddle as pid
-
from __future__ import print_function
+import piddle as pid
from pprint import pformat as pf
print("Lysol")
@@ -478,181 +477,180 @@ def plotSecurity(canvas, text="12345"):
# parameter: data is either object returned by reaper permutation function (called by MarkerRegressionPage.py)
# or the first object returned by direct (pair-scan) permu function (called by DirectPlotPage.py)
-#def plotBar(canvas, data, barColor=pid.blue, axesColor=pid.black, labelColor=pid.black, XLabel=None, YLabel=None, title=None, offset= (60, 20, 40, 40), zoom = 1):
-#
-# xLeftOffset, xRightOffset, yTopOffset, yBottomOffset = offset
-#
-# plotWidth = canvas.size[0] - xLeftOffset - xRightOffset
-# plotHeight = canvas.size[1] - yTopOffset - yBottomOffset
-# if plotHeight<=0 or plotWidth<=0:
-# return
-#
-# if len(data) < 2:
-# return
-#
-# max_D = max(data)
-# min_D = min(data)
-# #add by NL 06-20-2011: fix the error: when max_D is infinite, log function in detScale will go wrong
-# if max_D == float('inf') or max_D>webqtlConfig.MAXLRS:
-# max_D=webqtlConfig.MAXLRS #maximum LRS value
-#
-# xLow, xTop, stepX = detScale(min_D, max_D)
-#
-# #reduce data
-# step = ceil((xTop-xLow)/50.0)
-# j = xLow
-# dataXY = []
-# Count = []
-# while j <= xTop:
-# dataXY.append(j)
-# Count.append(0)
-# j += step
-#
-# for i, item in enumerate(data):
-# if item == float('inf') or item>webqtlConfig.MAXLRS:
-# item = webqtlConfig.MAXLRS #maximum LRS value
-# j = int((item-xLow)/step)
-# Count[j] += 1
-#
-# yLow, yTop, stepY=detScale(0,max(Count))
-#
-# #draw data
-# xScale = plotWidth/(xTop-xLow)
-# yScale = plotHeight/(yTop-yLow)
-# barWidth = xScale*step
-#
-# for i, count in enumerate(Count):
-# if count:
-# xc = (dataXY[i]-xLow)*xScale+xLeftOffset
-# yc =-(count-yLow)*yScale+yTopOffset+plotHeight
-# canvas.drawRect(xc+2,yc,xc+barWidth-2,yTopOffset+plotHeight,edgeColor=barColor,fillColor=barColor)
-#
-# #draw drawing region
-# canvas.drawRect(xLeftOffset, yTopOffset, xLeftOffset+plotWidth, yTopOffset+plotHeight)
-#
-# #draw scale
-# scaleFont=pid.Font(ttf="cour",size=11,bold=1)
-# x=xLow
-# for i in range(stepX+1):
-# xc=xLeftOffset+(x-xLow)*xScale
-# canvas.drawLine(xc,yTopOffset+plotHeight,xc,yTopOffset+plotHeight+5, color=axesColor)
-# strX = cformat(d=x, rank=0)
-# canvas.drawString(strX,xc-canvas.stringWidth(strX,font=scaleFont)/2,yTopOffset+plotHeight+14,font=scaleFont)
-# x+= (xTop - xLow)/stepX
-#
-# y=yLow
-# for i in range(stepY+1):
-# yc=yTopOffset+plotHeight-(y-yLow)*yScale
-# canvas.drawLine(xLeftOffset,yc,xLeftOffset-5,yc, color=axesColor)
-# strY = "%d" %y
-# canvas.drawString(strY,xLeftOffset-canvas.stringWidth(strY,font=scaleFont)-6,yc+5,font=scaleFont)
-# y+= (yTop - yLow)/stepY
-#
-# #draw label
-# labelFont=pid.Font(ttf="tahoma",size=17,bold=0)
-# if XLabel:
-# canvas.drawString(XLabel,xLeftOffset+(plotWidth-canvas.stringWidth(XLabel,font=labelFont))/2.0,
-# yTopOffset+plotHeight+yBottomOffset-10,font=labelFont,color=labelColor)
-#
-# if YLabel:
-# canvas.drawString(YLabel, 19, yTopOffset+plotHeight-(plotHeight-canvas.stringWidth(YLabel,font=labelFont))/2.0,
-# font=labelFont,color=labelColor,angle=90)
-#
-# labelFont=pid.Font(ttf="verdana",size=16,bold=0)
-# if title:
-# canvas.drawString(title,xLeftOffset+(plotWidth-canvas.stringWidth(title,font=labelFont))/2.0,
-# 20,font=labelFont,color=labelColor)
-#
-#def plotBarText(canvas, data, label, variance=None, barColor=pid.blue, axesColor=pid.black, labelColor=pid.black, XLabel=None, YLabel=None, title=None, sLabel = None, offset= (80, 20, 40, 100), barSpace = 2, zoom = 1):
-# xLeftOffset, xRightOffset, yTopOffset, yBottomOffset = offset
-# plotWidth = canvas.size[0] - xLeftOffset - xRightOffset
-# plotHeight = canvas.size[1] - yTopOffset - yBottomOffset
-# if plotHeight<=0 or plotWidth<=0:
-# return
-#
-# NNN = len(data)
-# if NNN < 2 or NNN != len(label):
-# return
-# if variance and len(variance)!=NNN:
-# variance = []
-#
-# Y2 = data[:]
-# if variance:
-# for i in range(NNN):
-# if variance[i]:
-# Y2 += [data[i]-variance[i]]
-#
-# #Y axis
-# YLow, YTop, stepY = detScale(min(Y2), max(Y2))
-# YScale = plotHeight/(YTop - YLow)
-#
-# if YLow < 0 and YTop > 0:
-# drawZero = 1
-# else:
-# drawZero = 0
-#
-# #X axis
-# X = range(NNN)
-# Xll= 0
-# Xur= NNN-1
-#
-#
-# if drawZero:
-# YZero = yTopOffset+plotHeight-YScale*(0-YLow)
-# canvas.drawLine(xLeftOffset, YZero, xLeftOffset+plotWidth, YZero)
-# else:
-# YZero = yTopOffset+plotHeight
-# #draw data
-# spaceWidth = barSpace
-# if spaceWidth < 1:
-# spaceWidth = 1
-# barWidth = int((plotWidth - (NNN-1.0)*spaceWidth)/NNN)
-#
-# xc= xLeftOffset
-# scaleFont=pid.Font(ttf="verdana",size=11,bold=0)
-# for i in range(NNN):
-# yc = yTopOffset+plotHeight-(data[i]-YLow)*YScale
-# canvas.drawRect(xc,YZero,xc+barWidth-1, yc, edgeColor=barColor,fillColor=barColor)
-# if variance and variance[i]:
-# varlen = variance[i]*YScale
-# if yc-varlen < yTopOffset:
-# topYd = yTopOffset
-# else:
-# topYd = yc-varlen
-# canvas.drawLine(xc+barWidth/2-2,yc-varlen,xc+barWidth/2+2,yc-varlen,color=pid.red)
-# canvas.drawLine(xc+barWidth/2,yc+varlen,xc+barWidth/2,topYd,color=pid.red)
-# canvas.drawLine(xc+barWidth/2-2,yc+varlen,xc+barWidth/2+2,yc+varlen,color=pid.red)
-# strX = label[i]
-# canvas.drawString(strX,xc+barWidth/2.0+2,yTopOffset+plotHeight+2+canvas.stringWidth(strX,font=scaleFont),font=scaleFont,angle=90)
-# xc += barWidth + spaceWidth
-#
-# #draw drawing region
-# canvas.drawRect(xLeftOffset, yTopOffset, xLeftOffset+plotWidth, yTopOffset+plotHeight)
-#
-# #draw Y scale
-# scaleFont=pid.Font(ttf="cour",size=16,bold=1)
-# y=YLow
-# for i in range(stepY+1):
-# yc=yTopOffset+plotHeight-(y-YLow)*YScale
-# canvas.drawLine(xLeftOffset,yc,xLeftOffset-5,yc, color=axesColor)
-# strY = cformat(d=y, rank=0)
-# canvas.drawString(strY,xLeftOffset-canvas.stringWidth(strY,font=scaleFont)-6,yc+5,font=scaleFont)
-# y+= (YTop - YLow)/stepY
-#
-# #draw label
-# labelFont=pid.Font(ttf="verdana",size=17,bold=0)
-# if XLabel:
-# canvas.drawString(XLabel,xLeftOffset+(plotWidth-canvas.stringWidth(XLabel,font=labelFont))/2.0,yTopOffset+plotHeight+65,font=labelFont,color=labelColor)
-#
-# if YLabel:
-# canvas.drawString(YLabel,xLeftOffset-50, yTopOffset+plotHeight-(plotHeight-canvas.stringWidth(YLabel,font=labelFont))/2.0,font=labelFont,color=labelColor,angle=90)
-#
-# labelFont=pid.Font(ttf="verdana",size=18,bold=0)
-# if title:
-# canvas.drawString(title,xLeftOffset,yTopOffset-15,font=labelFont,color=labelColor)
-#
-# return
-#
+def plotBar(canvas, data, barColor=pid.blue, axesColor=pid.black, labelColor=pid.black, XLabel=None, YLabel=None, title=None, offset= (60, 20, 40, 40), zoom = 1):
+ xLeftOffset, xRightOffset, yTopOffset, yBottomOffset = offset
+
+ plotWidth = canvas.size[0] - xLeftOffset - xRightOffset
+ plotHeight = canvas.size[1] - yTopOffset - yBottomOffset
+ if plotHeight<=0 or plotWidth<=0:
+ return
+
+ if len(data) < 2:
+ return
+
+ max_D = max(data)
+ min_D = min(data)
+ #add by NL 06-20-2011: fix the error: when max_D is infinite, log function in detScale will go wrong
+ if max_D == float('inf') or max_D>webqtlConfig.MAXLRS:
+ max_D=webqtlConfig.MAXLRS #maximum LRS value
+
+ xLow, xTop, stepX = detScale(min_D, max_D)
+
+ #reduce data
+ step = ceil((xTop-xLow)/50.0)
+ j = xLow
+ dataXY = []
+ Count = []
+ while j <= xTop:
+ dataXY.append(j)
+ Count.append(0)
+ j += step
+
+ for i, item in enumerate(data):
+ if item == float('inf') or item>webqtlConfig.MAXLRS:
+ item = webqtlConfig.MAXLRS #maximum LRS value
+ j = int((item-xLow)/step)
+ Count[j] += 1
+
+ yLow, yTop, stepY=detScale(0,max(Count))
+
+ #draw data
+ xScale = plotWidth/(xTop-xLow)
+ yScale = plotHeight/(yTop-yLow)
+ barWidth = xScale*step
+
+ for i, count in enumerate(Count):
+ if count:
+ xc = (dataXY[i]-xLow)*xScale+xLeftOffset
+ yc =-(count-yLow)*yScale+yTopOffset+plotHeight
+ canvas.drawRect(xc+2,yc,xc+barWidth-2,yTopOffset+plotHeight,edgeColor=barColor,fillColor=barColor)
+
+ #draw drawing region
+ canvas.drawRect(xLeftOffset, yTopOffset, xLeftOffset+plotWidth, yTopOffset+plotHeight)
+
+ #draw scale
+ scaleFont=pid.Font(ttf="cour",size=11,bold=1)
+ x=xLow
+ for i in range(int(stepX)+1):
+ xc=xLeftOffset+(x-xLow)*xScale
+ canvas.drawLine(xc,yTopOffset+plotHeight,xc,yTopOffset+plotHeight+5, color=axesColor)
+ strX = cformat(d=x, rank=0)
+ canvas.drawString(strX,xc-canvas.stringWidth(strX,font=scaleFont)/2,yTopOffset+plotHeight+14,font=scaleFont)
+ x+= (xTop - xLow)/stepX
+
+ y=yLow
+ for i in range(int(stepY)+1):
+ yc=yTopOffset+plotHeight-(y-yLow)*yScale
+ canvas.drawLine(xLeftOffset,yc,xLeftOffset-5,yc, color=axesColor)
+ strY = "%d" %y
+ canvas.drawString(strY,xLeftOffset-canvas.stringWidth(strY,font=scaleFont)-6,yc+5,font=scaleFont)
+ y+= (yTop - yLow)/stepY
+
+ #draw label
+ labelFont=pid.Font(ttf="tahoma",size=17,bold=0)
+ if XLabel:
+ canvas.drawString(XLabel,xLeftOffset+(plotWidth-canvas.stringWidth(XLabel,font=labelFont))/2.0,
+ yTopOffset+plotHeight+yBottomOffset-10,font=labelFont,color=labelColor)
+
+ if YLabel:
+ canvas.drawString(YLabel, 19, yTopOffset+plotHeight-(plotHeight-canvas.stringWidth(YLabel,font=labelFont))/2.0,
+ font=labelFont,color=labelColor,angle=90)
+
+ labelFont=pid.Font(ttf="verdana",size=16,bold=0)
+ if title:
+ canvas.drawString(title,xLeftOffset+(plotWidth-canvas.stringWidth(title,font=labelFont))/2.0,
+ 20,font=labelFont,color=labelColor)
+
+def plotBarText(canvas, data, label, variance=None, barColor=pid.blue, axesColor=pid.black, labelColor=pid.black, XLabel=None, YLabel=None, title=None, sLabel = None, offset= (80, 20, 40, 100), barSpace = 2, zoom = 1):
+ xLeftOffset, xRightOffset, yTopOffset, yBottomOffset = offset
+ plotWidth = canvas.size[0] - xLeftOffset - xRightOffset
+ plotHeight = canvas.size[1] - yTopOffset - yBottomOffset
+ if plotHeight<=0 or plotWidth<=0:
+ return
+
+ NNN = len(data)
+ if NNN < 2 or NNN != len(label):
+ return
+ if variance and len(variance)!=NNN:
+ variance = []
+
+ Y2 = data[:]
+ if variance:
+ for i in range(NNN):
+ if variance[i]:
+ Y2 += [data[i]-variance[i]]
+
+ #Y axis
+ YLow, YTop, stepY = detScale(min(Y2), max(Y2))
+ YScale = plotHeight/(YTop - YLow)
+
+ if YLow < 0 and YTop > 0:
+ drawZero = 1
+ else:
+ drawZero = 0
+
+ #X axis
+ X = range(NNN)
+ Xll= 0
+ Xur= NNN-1
+
+
+ if drawZero:
+ YZero = yTopOffset+plotHeight-YScale*(0-YLow)
+ canvas.drawLine(xLeftOffset, YZero, xLeftOffset+plotWidth, YZero)
+ else:
+ YZero = yTopOffset+plotHeight
+ #draw data
+ spaceWidth = barSpace
+ if spaceWidth < 1:
+ spaceWidth = 1
+ barWidth = int((plotWidth - (NNN-1.0)*spaceWidth)/NNN)
+
+ xc= xLeftOffset
+ scaleFont=pid.Font(ttf="verdana",size=11,bold=0)
+ for i in range(NNN):
+ yc = yTopOffset+plotHeight-(data[i]-YLow)*YScale
+ canvas.drawRect(xc,YZero,xc+barWidth-1, yc, edgeColor=barColor,fillColor=barColor)
+ if variance and variance[i]:
+ varlen = variance[i]*YScale
+ if yc-varlen < yTopOffset:
+ topYd = yTopOffset
+ else:
+ topYd = yc-varlen
+ canvas.drawLine(xc+barWidth/2-2,yc-varlen,xc+barWidth/2+2,yc-varlen,color=pid.red)
+ canvas.drawLine(xc+barWidth/2,yc+varlen,xc+barWidth/2,topYd,color=pid.red)
+ canvas.drawLine(xc+barWidth/2-2,yc+varlen,xc+barWidth/2+2,yc+varlen,color=pid.red)
+ strX = label[i]
+ canvas.drawString(strX,xc+barWidth/2.0+2,yTopOffset+plotHeight+2+canvas.stringWidth(strX,font=scaleFont),font=scaleFont,angle=90)
+ xc += barWidth + spaceWidth
+
+ #draw drawing region
+ canvas.drawRect(xLeftOffset, yTopOffset, xLeftOffset+plotWidth, yTopOffset+plotHeight)
+
+ #draw Y scale
+ scaleFont=pid.Font(ttf="cour",size=16,bold=1)
+ y=YLow
+ for i in range(stepY+1):
+ yc=yTopOffset+plotHeight-(y-YLow)*YScale
+ canvas.drawLine(xLeftOffset,yc,xLeftOffset-5,yc, color=axesColor)
+ strY = cformat(d=y, rank=0)
+ canvas.drawString(strY,xLeftOffset-canvas.stringWidth(strY,font=scaleFont)-6,yc+5,font=scaleFont)
+ y+= (YTop - YLow)/stepY
+
+ #draw label
+ labelFont=pid.Font(ttf="verdana",size=17,bold=0)
+ if XLabel:
+ canvas.drawString(XLabel,xLeftOffset+(plotWidth-canvas.stringWidth(XLabel,font=labelFont))/2.0,yTopOffset+plotHeight+65,font=labelFont,color=labelColor)
+
+ if YLabel:
+ canvas.drawString(YLabel,xLeftOffset-50, yTopOffset+plotHeight-(plotHeight-canvas.stringWidth(YLabel,font=labelFont))/2.0,font=labelFont,color=labelColor,angle=90)
+
+ labelFont=pid.Font(ttf="verdana",size=18,bold=0)
+ if title:
+ canvas.drawString(title,xLeftOffset,yTopOffset-15,font=labelFont,color=labelColor)
+
+ return
+
#def plotXY(canvas, dataX, dataY, rank=0, dataLabel=[], plotColor = pid.black, axesColor=pid.black, labelColor=pid.black, lineSize="thin", lineColor=pid.grey, idFont="arial", idColor=pid.blue, idSize="14", symbolColor=pid.black, symbolType="circle", filled="yes", symbolSize="tiny", XLabel=None, YLabel=None, title=None, fitcurve=None, connectdot=1, displayR=None, loadingPlot = 0, offset= (80, 20, 40, 60), zoom = 1, specialCases=[], showLabel = 1, bufferSpace = 15):
# 'displayR : correlation scatter plot, loadings : loading plot'
#