diff options
Diffstat (limited to 'wqflask/utility/tools.py')
| -rw-r--r-- | wqflask/utility/tools.py | 5 |
1 files changed, 4 insertions, 1 deletions
diff --git a/wqflask/utility/tools.py b/wqflask/utility/tools.py index 82ef136f..d71a9cef 100644 --- a/wqflask/utility/tools.py +++ b/wqflask/utility/tools.py @@ -217,13 +217,15 @@ USE_REDIS = get_setting_bool('USE_REDIS') USE_GN_SERVER = get_setting_bool('USE_GN_SERVER') GENENETWORK_FILES = get_setting('GENENETWORK_FILES') -TEMP_TRAITS = get_setting('TEMP_TRAITS') +# TEMP_TRAITS = get_setting('TEMP_TRAITS') PYLMM_COMMAND = pylmm_command() GEMMA_COMMAND = gemma_command() GEMMA_RESULTS_PATH = get_setting('GEMMA_RESULTS_PATH') +assert_dir(GEMMA_RESULTS_PATH) PLINK_COMMAND = plink_command() TEMPDIR = tempdir() # defaults to UNIX TMPDIR +assert_dir(TEMPDIR) from six import string_types @@ -240,6 +242,7 @@ if os.environ.get('WQFLASK_OVERRIDES'): OVERRIDES[k] = cmd logger.debug(OVERRIDES) +assert_file(get_setting("GENENETWORK_FILES")+"/auwerx/PheWAS_pval_EMMA_norm.RData") assert_dir(get_setting("JS_BIODALLIANCE")) assert_file(get_setting("JS_BIODALLIANCE")+"/build/dalliance-all.js") assert_file(get_setting("JS_BIODALLIANCE")+"/build/worker-all.js") |