diff options
Diffstat (limited to 'wqflask/utility/genofile_parser.py')
| -rw-r--r-- | wqflask/utility/genofile_parser.py | 10 |
1 files changed, 5 insertions, 5 deletions
diff --git a/wqflask/utility/genofile_parser.py b/wqflask/utility/genofile_parser.py index eb545478..86d9823e 100644 --- a/wqflask/utility/genofile_parser.py +++ b/wqflask/utility/genofile_parser.py @@ -37,10 +37,10 @@ class ConvertGenoFile: self.input_fh = open(input_file) print("!!!!!!!!!!!!!!!!PARSER!!!!!!!!!!!!!!!!!!") self.haplotype_notation = { - '@mat': "1", - '@pat': "2", - '@het': "-999", - '@unk': "-999" + '@mat': "1", + '@pat': "2", + '@het': "-999", + '@unk': "-999" } self.configurations = {} @@ -93,7 +93,7 @@ class ConvertGenoFile: for item_count, genotype in enumerate(genotypes): if genotype.upper().strip() in self.configurations: this_marker.genotypes.append( - self.configurations[genotype.upper().strip()]) + self.configurations[genotype.upper().strip()]) else: print("WARNING:", genotype.upper()) this_marker.genotypes.append("NA") |