diff options
Diffstat (limited to 'wqflask/tests')
| -rw-r--r-- | wqflask/tests/unit/wqflask/api/test_markdown_routes.py (renamed from wqflask/tests/unit/wqflask/test_markdown_routes.py) | 10 | ||||
| -rw-r--r-- | wqflask/tests/unit/wqflask/test_resource_manager.py | 94 | ||||
| -rw-r--r-- | wqflask/tests/unit/wqflask/wgcna/__init__.py | 0 | ||||
| -rw-r--r-- | wqflask/tests/unit/wqflask/wgcna/test_wgcna.py | 50 |
4 files changed, 149 insertions, 5 deletions
diff --git a/wqflask/tests/unit/wqflask/test_markdown_routes.py b/wqflask/tests/unit/wqflask/api/test_markdown_routes.py index 90e0f17c..1c513ac5 100644 --- a/wqflask/tests/unit/wqflask/test_markdown_routes.py +++ b/wqflask/tests/unit/wqflask/api/test_markdown_routes.py @@ -1,10 +1,10 @@ -"""Test functions in markdown utils""" +"""Test functions for wqflask/api/markdown.py""" import unittest from unittest import mock from dataclasses import dataclass -from wqflask.markdown_routes import render_markdown +from wqflask.api.markdown import render_markdown @dataclass @@ -24,9 +24,9 @@ This is another sub-heading""" class TestMarkdownRoutesFunctions(unittest.TestCase): - """Test cases for functions in markdown_routes""" + """Test cases for functions in markdown""" - @mock.patch('wqflask.markdown_routes.requests.get') + @mock.patch('wqflask.api.markdown.requests.get') def test_render_markdown_when_fetching_locally(self, requests_mock): requests_mock.return_value = MockRequests404() markdown_content = render_markdown("general/glossary/glossary.md") @@ -38,7 +38,7 @@ class TestMarkdownRoutesFunctions(unittest.TestCase): self.assertRegexpMatches(markdown_content, "Content for general/glossary/glossary.md not available.") - @mock.patch('wqflask.markdown_routes.requests.get') + @mock.patch('wqflask.api.markdown.requests.get') def test_render_markdown_when_fetching_remotely(self, requests_mock): requests_mock.return_value = MockRequests200() markdown_content = render_markdown("general/glossary/glossary.md") diff --git a/wqflask/tests/unit/wqflask/test_resource_manager.py b/wqflask/tests/unit/wqflask/test_resource_manager.py new file mode 100644 index 00000000..f4335425 --- /dev/null +++ b/wqflask/tests/unit/wqflask/test_resource_manager.py @@ -0,0 +1,94 @@ +"""Test cases for wqflask/resource_manager.py""" +import json +import unittest + +from unittest import mock +from gn3.authentication import get_user_membership +from gn3.authentication import get_highest_user_access_role +from gn3.authentication import DataRole +from gn3.authentication import AdminRole + + +class TestGetUserMembership(unittest.TestCase): + """Test cases for `get_user_membership`""" + + def setUp(self): + conn = mock.MagicMock() + conn.hgetall.return_value = { + '7fa95d07-0e2d-4bc5-b47c-448fdc1260b2': ( + '{"name": "editors", ' + '"admins": ["8ad942fe-490d-453e-bd37-56f252e41604", "rand"], ' + '"members": ["8ad942fe-490d-453e-bd37-56f252e41603", ' + '"rand"], ' + '"changed_timestamp": "Oct 06 2021 06:39PM", ' + '"created_timestamp": "Oct 06 2021 06:39PM"}')} + self.conn = conn + + def test_user_is_group_member_only(self): + """Test that a user is only a group member""" + self.assertEqual( + get_user_membership( + conn=self.conn, + user_id="8ad942fe-490d-453e-bd37-56f252e41603", + group_id="7fa95d07-0e2d-4bc5-b47c-448fdc1260b2"), + {"member": True, + "admin": False}) + + def test_user_is_group_admin_only(self): + """Test that a user is a group admin only""" + self.assertEqual( + get_user_membership( + conn=self.conn, + user_id="8ad942fe-490d-453e-bd37-56f252e41604", + group_id="7fa95d07-0e2d-4bc5-b47c-448fdc1260b2"), + {"member": False, + "admin": True}) + + def test_user_is_both_group_member_and_admin(self): + """Test that a user is both an admin and member of a group""" + self.assertEqual( + get_user_membership( + conn=self.conn, + user_id="rand", + group_id="7fa95d07-0e2d-4bc5-b47c-448fdc1260b2"), + {"member": True, + "admin": True}) + + +class TestCheckUserAccessRole(unittest.TestCase): + """Test cases for `get_highest_user_access_role`""" + + @mock.patch("wqflask.resource_manager.requests.get") + def test_edit_access(self, requests_mock): + """Test that the right access roles are set""" + response = mock.PropertyMock(return_value=json.dumps( + { + 'data': ['no-access', 'view', 'edit', ], + 'metadata': ['no-access', 'view', 'edit', ], + 'admin': ['not-admin', 'edit-access', ], + } + )) + type(requests_mock.return_value).content = response + self.assertEqual(get_highest_user_access_role( + resource_id="0196d92e1665091f202f", + user_id="8ad942fe-490d-453e-bd37"), + {"data": DataRole.EDIT, + "metadata": DataRole.EDIT, + "admin": AdminRole.EDIT_ACCESS}) + + @mock.patch("wqflask.resource_manager.requests.get") + def test_no_access(self, requests_mock): + response = mock.PropertyMock(return_value=json.dumps( + { + 'data': ['no-access', ], + 'metadata': ['no-access', ], + 'admin': ['not-admin', ], + } + )) + type(requests_mock.return_value).content = response + self.assertEqual(get_highest_user_access_role( + resource_id="0196d92e1665091f202f", + user_id=""), + {"data": DataRole.NO_ACCESS, + "metadata": DataRole.NO_ACCESS, + "admin": AdminRole.NOT_ADMIN}) diff --git a/wqflask/tests/unit/wqflask/wgcna/__init__.py b/wqflask/tests/unit/wqflask/wgcna/__init__.py new file mode 100644 index 00000000..e69de29b --- /dev/null +++ b/wqflask/tests/unit/wqflask/wgcna/__init__.py diff --git a/wqflask/tests/unit/wqflask/wgcna/test_wgcna.py b/wqflask/tests/unit/wqflask/wgcna/test_wgcna.py new file mode 100644 index 00000000..8e947e2f --- /dev/null +++ b/wqflask/tests/unit/wqflask/wgcna/test_wgcna.py @@ -0,0 +1,50 @@ + +"""module contains for processing gn3 wgcna data""" +from unittest import TestCase + +from wqflask.wgcna.gn3_wgcna import process_wgcna_data + + +class DataProcessingTests(TestCase): + """class contains data processing tests""" + + def test_data_processing(self): + """test for parsing data for datatable""" + output = { + "input": { + "sample_names": ["BXD1", "BXD2", "BXD3", "BXD4", "BXD5", "BXD6"], + + }, + "output": { + "ModEigens": { + "MEturquoise": [ + 0.0646677768085351, + 0.137200224277058, + 0.63451113720732, + -0.544002665501479, + -0.489487590361863, + 0.197111117570427 + ], + "MEgrey": [ + 0.213, + 0.214, + 0.3141, + -0.545, + -0.423, + 0.156, + ] + }}} + + row_data = [['BXD1', 0.065, 0.213], + ['BXD2', 0.137, 0.214], + ['BXD3', 0.635, 0.314], + ['BXD4', -0.544, -0.545], + ['BXD5', -0.489, -0.423], + ['BXD6', 0.197, 0.156]] + + expected_results = { + "col_names": ["sample_names", "MEturquoise", "MEgrey"], + "mod_dataset": row_data + } + + self.assertEqual(process_wgcna_data(output), expected_results) |