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-rw-r--r--wqflask/tests/unit/wqflask/snp_browser/test_snp_browser.py23
1 files changed, 12 insertions, 11 deletions
diff --git a/wqflask/tests/unit/wqflask/snp_browser/test_snp_browser.py b/wqflask/tests/unit/wqflask/snp_browser/test_snp_browser.py
index e8751778..9ec32c78 100644
--- a/wqflask/tests/unit/wqflask/snp_browser/test_snp_browser.py
+++ b/wqflask/tests/unit/wqflask/snp_browser/test_snp_browser.py
@@ -15,6 +15,18 @@ class TestSnpBrowser(unittest.TestCase):
def tearDown(self):
self.app_context.pop()
+ def test_get_header_list(self):
+ empty_columns={"snp_source":"false","conservation_score":"true","gene_name":"false","transcript":"false","exon":"false","domain_2":"true","function":"false","function_details":"true"}
+ strains={"mouse":["S1","S2","S3","S4","S5"],"rat":[]}
+ expected_results=([['Index', 'SNP ID', 'Chr', 'Mb', 'Alleles', 'ConScore', 'Domain 1', 'Domain 2', 'Details'], ['S1', 'S2', 'S3', 'S4', 'S5']], 5)
+
+ results_with_snp=get_header_list(variant_type="SNP",strains=strains,species="Mouse",empty_columns=empty_columns)
+ results_with_indel=get_header_list(variant_type="InDel",strains=strains,species="rat",empty_columns=[])
+ expected_results_with_indel=(['Index', 'ID', 'Type', 'InDel Chr', 'Mb Start', 'Mb End', 'Strand', 'Size', 'Sequence', 'Source'],0)
+
+ self.assertEqual(expected_results,results_with_snp)
+ self.assertEqual(results_with_indel,expected_results_with_indel)
+
@mock.patch("wqflask.snp_browser.snp_browser.g")
def test_get_gene_id(self, mock_db):
@@ -56,17 +68,6 @@ class TestSnpBrowser(unittest.TestCase):
results=get_browser_sample_lists(species_id="12")
self.assertEqual(results, {'mouse': [], 'rat': []})
- def test_get_header_list(self):
- empty_columns={"snp_source":"false","conservation_score":"true","gene_name":"false","transcript":"false","exon":"false","domain_2":"true","function":"false","function_details":"true"}
- strains={"mouse":["S1","S2","S3","S4","S5"],"rat":[]}
- expected_results=([['Index', 'SNP ID', 'Chr', 'Mb', 'Alleles', 'ConScore', 'Domain 1', 'Domain 2', 'Details'], ['S1', 'S2', 'S3', 'S4', 'S5']], 5)
-
- results_with_snp=get_header_list(variant_type="SNP",strains=strains,species="Mouse",empty_columns=empty_columns)
- results_with_indel=get_header_list(variant_type="InDel",strains=strains,species="rat",empty_columns=[])
- expected_results_with_indel=(['Index', 'ID', 'Type', 'InDel Chr', 'Mb Start', 'Mb End', 'Strand', 'Size', 'Sequence', 'Source'],0)
-
- self.assertEqual(expected_results,results_with_snp)
- self.assertEqual(results_with_indel,expected_results_with_indel)