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-rw-r--r--wqflask/tests/unit/wqflask/api/test_mapping.py114
1 files changed, 114 insertions, 0 deletions
diff --git a/wqflask/tests/unit/wqflask/api/test_mapping.py b/wqflask/tests/unit/wqflask/api/test_mapping.py
new file mode 100644
index 00000000..87b18e84
--- /dev/null
+++ b/wqflask/tests/unit/wqflask/api/test_mapping.py
@@ -0,0 +1,114 @@
+import unittest
+from unittest import mock
+from wqflask.api.mapping import initialize_parameters
+
+
+class AttributeSetter:
+ def __init__(self,obj):
+ for key,value in obj.items():
+ setattr(self,key,value)
+
+class MockGroup(AttributeSetter):
+ def get_marker(self):
+ return None
+class TestMock(unittest.TestCase):
+
+ # @mock.patch("wqflask.api.mapping.gemma_mapping")
+ # @mock.patch("wqflask.api.mapping.nitialize_parameters")
+ # @mock.patch("wqflask.api.mapping.retrieve_sample_data")
+ # @mock.patch("wqflask.api.mapping.create_trait")
+ # @mock.patch("wqflask.api.mapping.data_set")
+ # def test_do_mapping_for_api(self,mock_dataset,mock_create_trait,mock_retrieve_data,mock_gemma):
+
+ # start_vars={
+ # "db":"sql_uri/db_web1",
+ # "trait_id":"idsui332rh3ui2t",
+ # "limit_to":32.1,
+ # }
+ # group_samplelist=["S1","S2","S3","S4"]
+ # dataset_group=MockGroup({"samplelist":group_samplelist})
+ # dataset=AttributeSetter({"type":"Temp","group":dataset_group})
+
+ # this_trait_data={
+ # "Item1":AttributeSetter({
+ # "name":"S1",
+ # "value":"V1"
+ # }),
+
+ # "Item2":AttributeSetter({
+ # "name":"S2",
+ # "value":"V2"
+ # }),
+
+ # "Item3":AttributeSetter({
+ # "name":"SX",
+ # "value":"VX"
+ # })
+ # }
+
+ # this_trait=AttributeSetter({"data":this_trait_data})
+
+
+ # mock_dataset.create_dataset.return_value=dataset
+
+ # mock_create_trait.return_value=this_trait
+ # mock_retrieve_data.return_value=this_trait
+
+ # mock_initialize_params={
+ # "format":"json",
+ # "limit_to":32.1,
+ # "mapping_method":"gemma",
+ # "maf":0.01,
+ # "use_loco":True,
+ # "num_perm":0,
+ # "perm_check":False
+
+ # }
+
+ # mock_gemma.return_value=[ ,"filename"]
+ # pass
+
+ def test_initialize_parameters(self):
+ expected_results={
+ "format":"json",
+ "limit_to":False,
+ "mapping_method":"gemma",
+ "maf":0.01,
+ "use_loco":True,
+ "num_perm":0,
+ "perm_check":False
+ }
+
+ results=initialize_parameters(start_vars={},dataset={},this_trait={})
+ self.assertEqual(results,expected_results)
+
+ start_vars={
+ "format":"F1",
+ "limit_to":"1",
+ "mapping_method":"rqtl",
+ "control_marker":True,
+ "pair_scan":"true",
+ "interval_mapping":"true",
+ "use_loco":"true",
+ "num_perm":"14"
+
+ }
+
+ results_2=initialize_parameters(start_vars=start_vars,dataset={},this_trait={})
+ expected_results={
+ "format":"F1",
+ "limit_to":1,
+ "mapping_method":"gemma",
+ "maf":0.01,
+ "use_loco":True,
+ "num_perm":14,
+ "perm_check":"ON"
+ }
+
+ self.assertEqual(results_2,expected_results)
+
+
+
+
+
+