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Diffstat (limited to 'wqflask/tests/base/test_data_set.py')
-rw-r--r--wqflask/tests/base/test_data_set.py71
1 files changed, 57 insertions, 14 deletions
diff --git a/wqflask/tests/base/test_data_set.py b/wqflask/tests/base/test_data_set.py
index dd7f5051..96563a16 100644
--- a/wqflask/tests/base/test_data_set.py
+++ b/wqflask/tests/base/test_data_set.py
@@ -1,10 +1,10 @@
"""Tests for wqflask/base/data_set.py"""
import unittest
-import mock
+from unittest import mock
from wqflask import app
-from data import gen_menu_json
+from .data import gen_menu_json
from base.data_set import DatasetType
@@ -59,9 +59,14 @@ class TestDataSetTypes(unittest.TestCase):
self.assertEqual(data_set("BXDGeno"), "Geno")
self.assertEqual(data_set("BXDPublish"), "Publish")
self.assertEqual(data_set("HLC_0311"), "ProbeSet")
+
redis_mock.set.assert_called_once_with(
"dataset_structure",
- '{"BXDGeno": "Geno", "BXDPublish": "Publish", "HLCPublish": "Publish", "HLC_0311": "ProbeSet", "HC_M2_0606_P": "ProbeSet"}')
+ ('{"HLC_0311": "ProbeSet", '
+ '"HLCPublish": "Publish", '
+ '"BXDGeno": "Geno", '
+ '"HC_M2_0606_P": "ProbeSet", '
+ '"BXDPublish": "Publish"}'))
@mock.patch('base.data_set.g')
def test_set_dataset_key_mrna(self, db_mock):
@@ -74,8 +79,17 @@ class TestDataSetTypes(unittest.TestCase):
self.assertEqual(data_set("Test"), "ProbeSet")
redis_mock.set.assert_called_once_with(
"dataset_structure",
- '{"Aging-Brain-UCIPublish": "Publish", "AKXDGeno": "Geno", "B139_K_1206_M": "ProbeSet", "AD-cases-controls-MyersGeno": "Geno", "AD-cases-controls-MyersPublish": "Publish", "All Phenotypes": "Publish", "Test": "ProbeSet", "AXBXAPublish": "Publish", "B139_K_1206_R": "ProbeSet", "AXBXAGeno": "Geno"}')
- expected_db_call = """"""
+ ('{"AD-cases-controls-MyersGeno": "Geno", '
+ '"AD-cases-controls-MyersPublish": "Publish", '
+ '"AKXDGeno": "Geno", '
+ '"AXBXAGeno": "Geno", '
+ '"AXBXAPublish": "Publish", '
+ '"Aging-Brain-UCIPublish": "Publish", '
+ '"All Phenotypes": "Publish", '
+ '"B139_K_1206_M": "ProbeSet", '
+ '"B139_K_1206_R": "ProbeSet", '
+ '"Test": "ProbeSet"}'))
+
db_mock.db.execute.assert_called_with(
("SELECT ProbeSetFreeze.Id FROM ProbeSetFreeze " +
"WHERE ProbeSetFreeze.Name = \"Test\" ")
@@ -92,12 +106,21 @@ class TestDataSetTypes(unittest.TestCase):
self.assertEqual(data_set("Test"), "Publish")
redis_mock.set.assert_called_once_with(
"dataset_structure",
- '{"Aging-Brain-UCIPublish": "Publish", "AKXDGeno": "Geno", "B139_K_1206_M": "ProbeSet", "AD-cases-controls-MyersGeno": "Geno", "AD-cases-controls-MyersPublish": "Publish", "All Phenotypes": "Publish", "Test": "Publish", "AXBXAPublish": "Publish", "B139_K_1206_R": "ProbeSet", "AXBXAGeno": "Geno"}')
+ ('{"AD-cases-controls-MyersGeno": "Geno", '
+ '"AD-cases-controls-MyersPublish": "Publish", '
+ '"AKXDGeno": "Geno", '
+ '"AXBXAGeno": "Geno", '
+ '"AXBXAPublish": "Publish", '
+ '"Aging-Brain-UCIPublish": "Publish", '
+ '"All Phenotypes": "Publish", '
+ '"B139_K_1206_M": "ProbeSet", '
+ '"B139_K_1206_R": "ProbeSet", '
+ '"Test": "Publish"}'))
db_mock.db.execute.assert_called_with(
- ("SELECT InfoFiles.GN_AccesionId " +
- "FROM InfoFiles, PublishFreeze, InbredSet " +
+ ("SELECT InfoFiles.GN_AccesionId "
+ "FROM InfoFiles, PublishFreeze, InbredSet "
"WHERE InbredSet.Name = 'Test' AND "
- "PublishFreeze.InbredSetId = InbredSet.Id AND " +
+ "PublishFreeze.InbredSetId = InbredSet.Id AND "
"InfoFiles.InfoPageName = PublishFreeze.Name")
)
@@ -110,9 +133,20 @@ class TestDataSetTypes(unittest.TestCase):
data_set = DatasetType(redis_mock)
data_set.set_dataset_key("other_pheno", "Test")
self.assertEqual(data_set("Test"), "Publish")
+
redis_mock.set.assert_called_once_with(
"dataset_structure",
- '{"Aging-Brain-UCIPublish": "Publish", "AKXDGeno": "Geno", "B139_K_1206_M": "ProbeSet", "AD-cases-controls-MyersGeno": "Geno", "AD-cases-controls-MyersPublish": "Publish", "All Phenotypes": "Publish", "Test": "Publish", "AXBXAPublish": "Publish", "B139_K_1206_R": "ProbeSet", "AXBXAGeno": "Geno"}')
+ ('{"AD-cases-controls-MyersGeno": "Geno", '
+ '"AD-cases-controls-MyersPublish": "Publish", '
+ '"AKXDGeno": "Geno", '
+ '"AXBXAGeno": "Geno", '
+ '"AXBXAPublish": "Publish", '
+ '"Aging-Brain-UCIPublish": "Publish", '
+ '"All Phenotypes": "Publish", '
+ '"B139_K_1206_M": "ProbeSet", '
+ '"B139_K_1206_R": "ProbeSet", '
+ '"Test": "Publish"}'))
+
db_mock.db.execute.assert_called_with(
("SELECT PublishFreeze.Name " +
"FROM PublishFreeze, InbredSet " +
@@ -131,8 +165,17 @@ class TestDataSetTypes(unittest.TestCase):
self.assertEqual(data_set("Test"), "Geno")
redis_mock.set.assert_called_once_with(
"dataset_structure",
- '{"Aging-Brain-UCIPublish": "Publish", "AKXDGeno": "Geno", "B139_K_1206_M": "ProbeSet", "AD-cases-controls-MyersGeno": "Geno", "AD-cases-controls-MyersPublish": "Publish", "All Phenotypes": "Publish", "Test": "Geno", "AXBXAPublish": "Publish", "B139_K_1206_R": "ProbeSet", "AXBXAGeno": "Geno"}')
- expected_db_call = """"""
+ ('{"AD-cases-controls-MyersGeno": "Geno", '
+ '"AD-cases-controls-MyersPublish": "Publish", '
+ '"AKXDGeno": "Geno", '
+ '"AXBXAGeno": "Geno", '
+ '"AXBXAPublish": "Publish", '
+ '"Aging-Brain-UCIPublish": "Publish", '
+ '"All Phenotypes": "Publish", '
+ '"B139_K_1206_M": "ProbeSet", '
+ '"B139_K_1206_R": "ProbeSet", '
+ '"Test": "Geno"}'))
+
db_mock.db.execute.assert_called_with(
- ("SELECT GenoFreeze.Id FROM GenoFreeze WHERE GenoFreeze.Name = \"Test\" ")
- )
+ ("SELECT GenoFreeze.Id FROM "
+ "GenoFreeze WHERE GenoFreeze.Name = \"Test\" "))