1 files changed, 0 insertions, 273350 deletions

diff --git a/wqflask/output/HLC_output.assoc.txt b/wqflask/output/HLC_output.assoc.txt
deleted file mode 100755
index 962ee30a..00000000
--- a/wqflask/output/HLC_output.assoc.txt
+++ /dev/null
@@ -1,273350 +0,0 @@
-chr	rs	ps	n_miss	allele1	allele0	af	beta	se	l_remle	p_wald
-0	rs1155740	0	18	T	C	0.274	-8.927624e+01	1.026031e+02	1.643091e+01	3.847300e-01
-0	rs1169469	0	16	T	C	0.105	9.200707e+01	1.491476e+02	1.583560e+01	5.376401e-01
-0	rs11775	0	19	G	A	0.327	-1.489315e+02	9.702455e+01	1.590665e+01	1.255308e-01
-0	rs1368258	0	13	T	C	0.343	8.160595e+01	1.001130e+02	1.609552e+01	4.154496e-01
-0	rs1414747	0	17	A	C	0.446	9.248497e+01	8.917807e+01	1.569481e+01	3.002873e-01
-0	rs1459037	0	7	G	A	0.290	-9.386644e-01	9.966103e+01	1.591604e+01	9.924896e-01
-0	rs150775	0	20	T	G	0.061	-2.146073e+02	1.912066e+02	1.593540e+01	2.623327e-01
-0	rs1538704	0	6	G	A	0.292	-5.174857e+01	9.488451e+01	1.577911e+01	5.857750e-01
-0	rs1578301	0	0	C	T	0.447	3.293481e+01	9.209531e+01	1.595064e+01	7.208078e-01
-0	rs16907085	0	1	G	A	0.124	1.249005e+02	1.392221e+02	1.599469e+01	3.701568e-01
-0	rs16992891	0	3	T	C	0.333	-6.977747e+01	9.374774e+01	1.599852e+01	4.570997e-01
-0	rs17566573	0	20	A	G	0.195	1.370863e+02	1.163727e+02	1.591232e+01	2.394583e-01
-0	rs2229935	0	1	T	C	0.275	-2.270192e+02	1.006232e+02	1.573053e+01	2.456991e-02
-0	rs2230394	0	5	T	C	0.098	2.579272e+02	1.549294e+02	1.577268e+01	9.668865e-02
-0	rs2230395	0	1	C	A	0.101	2.609912e+02	1.525609e+02	1.573474e+01	8.785997e-02
-0	rs2387949	0	8	A	G	0.119	1.002418e+02	1.333433e+02	1.586741e+01	4.526132e-01
-0	rs2565615	0	21	T	A	0.498	1.478314e+02	9.398838e+01	1.598875e+01	1.164932e-01
-0	rs2886026	0	5	G	A	0.435	-8.558085e+01	9.199129e+01	1.601461e+01	3.527363e-01
-0	rs2886027	0	18	A	G	0.436	-7.448537e+01	9.355173e+01	1.599255e+01	4.263635e-01
-0	rs2903177	0	11	G	A	0.050	2.461875e+02	1.950445e+02	1.790120e+01	2.075648e-01
-0	rs2903407	0	1	G	A	0.130	3.776679e+01	1.343046e+02	1.585527e+01	7.786919e-01
-0	rs3818890	0	7	A	G	0.044	-2.784716e+02	2.209028e+02	1.597487e+01	2.081422e-01
-0	rs3885710	0	2	C	T	0.029	-4.563270e+02	2.583355e+02	1.605043e+01	7.804452e-02
-0	rs3923989	0	3	G	A	0.208	-6.478366e+00	1.096655e+02	1.594977e+01	9.529210e-01
-0	rs3928422	0	15	T	C	0.476	1.178778e+02	8.911709e+01	1.635353e+01	1.866367e-01
-0	rs3929758	0	0	C	A	0.276	-1.082620e+01	9.917858e+01	1.597915e+01	9.131282e-01
-0	rs3963196	0	6	C	G	0.110	-1.223485e+02	1.457098e+02	1.581492e+01	4.015641e-01
-0	rs3990898	0	19	T	C	0.475	7.803269e+01	9.229887e+01	1.603365e+01	3.983437e-01
-0	rs4000844	0	3	C	T	0.324	5.304427e+01	9.416013e+01	1.597918e+01	5.734998e-01
-0	rs449837	0	2	C	T	0.120	-1.714379e+02	1.343282e+02	1.590009e+01	2.025601e-01
-0	rs5749531	0	6	C	T	0.270	3.360770e+01	9.988338e+01	1.605925e+01	7.366830e-01
-0	rs828748	0	13	A	T	0.469	1.313925e+02	8.669709e+01	1.582815e+01	1.303802e-01
-0	rs9620258	0	18	T	C	0.465	5.493139e+00	9.410155e+01	1.595825e+01	9.534777e-01
-0	rs9625253	0	2	C	G	0.166	-2.965483e+01	1.168450e+02	1.595882e+01	7.997757e-01
-1	rs4040617	819184	0	G	A	0.129	-1.461435e+02	1.322900e+02	1.593512e+01	2.699056e-01
-1	rs4075116	1043551	3	G	A	0.303	-1.213767e+02	9.411141e+01	1.594662e+01	1.978516e-01
-1	rs10907175	1170649	2	C	A	0.104	-3.134470e+02	1.436499e+02	1.604784e+01	2.965499e-02
-1	rs6603781	1198553	9	A	G	0.104	2.969327e+01	1.566109e+02	1.598022e+01	8.497139e-01
-1	rs6685064	1251214	1	T	C	0.072	-2.344562e+01	1.712186e+02	1.600270e+01	8.911479e-01
-1	rs1695824	1450836	7	G	T	0.242	9.504432e+01	1.052646e+02	1.570121e+01	3.670860e-01
-1	rs3766180	1563419	10	G	A	0.294	-4.599604e+01	9.459196e+01	1.598563e+01	6.270353e-01
-1	rs6603791	1586207	5	G	A	0.315	-2.993825e+01	9.426220e+01	1.599451e+01	7.509397e-01
-1	rs2281173	1720353	8	A	G	0.094	3.187159e+01	1.490880e+02	1.595439e+01	8.308235e-01
-1	rs1107910	1724482	11	G	A	0.444	-9.931061e+01	8.821614e+01	1.590374e+01	2.609005e-01
-1	rs2272908	1753640	6	T	C	0.499	6.396691e+01	8.345319e+01	1.591206e+01	4.438041e-01
-1	rs3737628	1755093	7	T	C	0.496	7.778926e+01	8.489332e+01	1.594231e+01	3.600198e-01
-1	rs9786963	1791187	11	T	C	0.055	1.753881e+02	1.868894e+02	1.587395e+01	3.485413e-01
-1	rs10907187	1791215	2	A	G	0.280	-1.286666e+02	9.769479e+01	1.591722e+01	1.885394e-01
-1	rs7511905	1825947	1	A	C	0.055	1.609249e+02	1.851321e+02	1.588606e+01	3.852045e-01
-1	rs6603803	1844849	1	G	A	0.496	4.651446e+01	8.390227e+01	1.595272e+01	5.796046e-01
-1	rs6688000	1856083	17	A	G	0.057	1.704289e+02	1.856329e+02	1.590330e+01	3.590892e-01
-1	rs2803285	1920530	13	T	C	0.164	-1.408359e+02	1.210137e+02	1.582866e+01	2.451572e-01
-1	rs7513222	2060062	4	A	G	0.342	1.384829e+02	8.723874e+01	1.577647e+01	1.131654e-01
-1	rs3107146	2079745	10	T	C	0.118	1.295004e+02	1.364641e+02	1.606285e+01	3.431747e-01
-1	rs385039	2109570	8	G	A	0.289	4.250682e+00	9.517121e+01	1.594592e+01	9.643965e-01
-1	rs3128309	2138039	13	A	G	0.091	-1.097018e+01	1.534346e+02	1.593508e+01	9.430355e-01
-1	rs262680	2199310	21	A	G	0.413	1.409567e+02	9.247537e+01	1.561266e+01	1.281870e-01
-1	rs16824948	2218381	6	T	C	0.056	1.598787e+02	1.970878e+02	1.613262e+01	4.177019e-01
-1	rs12084736	2221741	2	T	C	0.061	2.564816e+02	1.876446e+02	1.561717e+01	1.723957e-01
-1	rs2132303	2255419	2	T	C	0.135	8.299719e+01	1.273446e+02	1.605616e+01	5.149129e-01
-1	rs1496555	2266412	1	A	G	0.133	9.495359e+01	1.255374e+02	1.609197e+01	4.498423e-01
-1	rs7527871	2313887	15	C	A	0.161	-7.862444e+01	1.173387e+02	1.603738e+01	5.031809e-01
-1	rs2843130	2315474	3	C	G	0.171	1.973450e+02	1.137917e+02	1.579135e+01	8.359616e-02
-1	rs2840528	2316057	3	G	A	0.434	1.344988e+02	8.997627e+01	1.607434e+01	1.357023e-01
-1	rs7545940	2331788	1	C	T	0.344	-1.554280e+02	9.625422e+01	1.596828e+01	1.071035e-01
-1	rs10910060	2335072	10	A	G	0.223	3.075373e+01	1.072815e+02	1.592314e+01	7.745094e-01
-1	rs4648633	2352863	4	C	T	0.232	-1.713292e+02	1.068102e+02	1.623462e+01	1.094455e-01
-1	rs12023660	2389971	11	T	C	0.102	3.777468e+02	1.472089e+02	1.545763e+01	1.062787e-02
-1	rs7512269	2450786	7	T	C	0.124	-2.534482e+02	1.378508e+02	1.638189e+01	6.667622e-02
-1	rs2246732	2482555	4	C	T	0.228	1.161749e+02	1.102649e+02	1.606767e+01	2.926654e-01
-1	rs2985862	2484730	6	A	G	0.236	-3.732541e+01	1.060700e+02	1.586390e+01	7.250921e-01
-1	rs3122922	2488364	1	T	C	0.201	-2.122403e+01	1.106516e+02	1.591067e+01	8.479831e-01
-1	rs10910093	2537874	1	T	C	0.129	4.964861e+01	1.370465e+02	1.586721e+01	7.173261e-01
-1	rs4486391	2545216	3	T	A	0.483	2.032426e+02	9.306412e+01	1.553051e+01	2.951571e-02
-1	rs10910097	2553591	11	T	C	0.192	-2.368664e+01	1.142185e+02	1.599860e+01	8.358124e-01
-1	rs6684865	2578390	14	A	G	0.328	1.894326e+02	9.558432e+01	1.621282e+01	4.814123e-02
-1	rs3890745	2585785	3	G	A	0.323	1.841459e+02	9.522006e+01	1.608354e+01	5.378930e-02
-1	rs2377041	2736484	16	A	G	0.438	-1.221209e+02	9.391349e+01	1.571199e+01	1.941839e-01
-1	rs4648360	2746501	15	T	C	0.453	-1.500718e+02	9.400172e+01	1.616623e+01	1.111251e-01
-1	rs729045	2777562	21	C	T	0.451	8.822019e+01	9.272657e+01	1.601325e+01	3.419414e-01
-1	rs6680471	2777668	1	T	C	0.471	-4.180439e+01	9.462984e+01	1.592724e+01	6.588822e-01
-1	rs12049543	2784531	7	A	C	0.448	-4.984866e+01	8.944197e+01	1.581283e+01	5.775957e-01
-1	rs897631	2848523	0	C	T	0.248	-2.945225e+01	1.060741e+02	1.604098e+01	7.814104e-01
-1	rs897632	2849319	15	A	G	0.257	-3.677836e+01	1.068850e+02	1.606365e+01	7.309466e-01
-1	rs10752728	2867410	18	T	A	0.244	9.541699e+00	1.099327e+02	1.594323e+01	9.308747e-01
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-1	rs2606414	2890304	7	T	C	0.301	9.059183e+01	1.003563e+02	1.592671e+01	3.671953e-01
-1	rs6659552	2902616	8	C	G	0.245	-9.022798e+01	1.035073e+02	1.614374e+01	3.838609e-01
-1	rs10909855	2931544	4	T	C	0.128	8.116666e+01	1.414506e+02	1.587561e+01	5.663956e-01
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-1	694027	2973527	13	T	G	0.174	-7.397515e+01	1.271141e+02	1.599071e+01	5.609032e-01
-1	rs10489588	2974990	1	T	C	0.207	1.052888e+01	1.159417e+02	1.595444e+01	9.276849e-01
-1	rs9661525	2975996	7	G	T	0.187	-5.255146e+00	1.213005e+02	1.595900e+01	9.654641e-01
-1	rs12409277	2980756	9	C	T	0.187	5.646530e+01	1.204650e+02	1.585813e+01	6.395044e-01
-1	rs6665853	3004997	5	A	G	0.297	-9.779405e+01	9.789632e+01	1.547179e+01	3.183848e-01
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-1	rs2817178	3070408	2	C	T	0.420	-8.163211e+01	8.788125e+01	1.604912e+01	3.534728e-01
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