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-rw-r--r--wqflask/maintenance/gen_select_dataset.py17
-rw-r--r--wqflask/maintenance/get_group_samplelists.py2
2 files changed, 10 insertions, 9 deletions
diff --git a/wqflask/maintenance/gen_select_dataset.py b/wqflask/maintenance/gen_select_dataset.py
index be028bdd..647e58a2 100644
--- a/wqflask/maintenance/gen_select_dataset.py
+++ b/wqflask/maintenance/gen_select_dataset.py
@@ -80,7 +80,8 @@ def parse_db_uri():
def get_species():
"""Build species list"""
- Cursor.execute("select Name, MenuName from Species where Species.Name != 'macaque monkey' order by OrderId")
+ #Cursor.execute("select Name, MenuName from Species where Species.Name != 'macaque monkey' order by OrderId")
+ Cursor.execute("select Name, MenuName from Species order by OrderId")
species = list(Cursor.fetchall())
return species
@@ -284,13 +285,13 @@ def main():
types = get_types(groups)
datasets = get_datasets(types)
- species.append(('All Species', 'All Species'))
- groups['All Species'] = [('All Groups', 'All Groups')]
- types['All Species'] = {}
- types['All Species']['All Groups'] = [('Phenotypes', 'Phenotypes')]
- datasets['All Species'] = {}
- datasets['All Species']['All Groups'] = {}
- datasets['All Species']['All Groups']['Phenotypes'] = [('All Phenotypes','All Phenotypes')]
+ #species.append(('All Species', 'All Species'))
+ #groups['All Species'] = [('All Groups', 'All Groups')]
+ #types['All Species'] = {}
+ #types['All Species']['All Groups'] = [('Phenotypes', 'Phenotypes')]
+ #datasets['All Species'] = {}
+ #datasets['All Species']['All Groups'] = {}
+ #datasets['All Species']['All Groups']['Phenotypes'] = [('All Phenotypes','All Phenotypes')]
data = dict(species=species,
groups=groups,
diff --git a/wqflask/maintenance/get_group_samplelists.py b/wqflask/maintenance/get_group_samplelists.py
index 1dc6c46c..fb22898a 100644
--- a/wqflask/maintenance/get_group_samplelists.py
+++ b/wqflask/maintenance/get_group_samplelists.py
@@ -27,7 +27,7 @@ def get_samplelist_from_geno(genofilename):
continue
break
- headers = line.split()
+ headers = line.split("\t")
if headers[3] == "Mb":
samplelist = headers[4:]