diff options
Diffstat (limited to 'wqflask/maintenance')
-rw-r--r-- | wqflask/maintenance/gen_select_dataset.py | 17 | ||||
-rw-r--r-- | wqflask/maintenance/get_group_samplelists.py | 2 |
2 files changed, 10 insertions, 9 deletions
diff --git a/wqflask/maintenance/gen_select_dataset.py b/wqflask/maintenance/gen_select_dataset.py index be028bdd..647e58a2 100644 --- a/wqflask/maintenance/gen_select_dataset.py +++ b/wqflask/maintenance/gen_select_dataset.py @@ -80,7 +80,8 @@ def parse_db_uri(): def get_species(): """Build species list""" - Cursor.execute("select Name, MenuName from Species where Species.Name != 'macaque monkey' order by OrderId") + #Cursor.execute("select Name, MenuName from Species where Species.Name != 'macaque monkey' order by OrderId") + Cursor.execute("select Name, MenuName from Species order by OrderId") species = list(Cursor.fetchall()) return species @@ -284,13 +285,13 @@ def main(): types = get_types(groups) datasets = get_datasets(types) - species.append(('All Species', 'All Species')) - groups['All Species'] = [('All Groups', 'All Groups')] - types['All Species'] = {} - types['All Species']['All Groups'] = [('Phenotypes', 'Phenotypes')] - datasets['All Species'] = {} - datasets['All Species']['All Groups'] = {} - datasets['All Species']['All Groups']['Phenotypes'] = [('All Phenotypes','All Phenotypes')] + #species.append(('All Species', 'All Species')) + #groups['All Species'] = [('All Groups', 'All Groups')] + #types['All Species'] = {} + #types['All Species']['All Groups'] = [('Phenotypes', 'Phenotypes')] + #datasets['All Species'] = {} + #datasets['All Species']['All Groups'] = {} + #datasets['All Species']['All Groups']['Phenotypes'] = [('All Phenotypes','All Phenotypes')] data = dict(species=species, groups=groups, diff --git a/wqflask/maintenance/get_group_samplelists.py b/wqflask/maintenance/get_group_samplelists.py index 1dc6c46c..fb22898a 100644 --- a/wqflask/maintenance/get_group_samplelists.py +++ b/wqflask/maintenance/get_group_samplelists.py @@ -27,7 +27,7 @@ def get_samplelist_from_geno(genofilename): continue break - headers = line.split() + headers = line.split("\t") if headers[3] == "Mb": samplelist = headers[4:] |