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-rw-r--r--wqflask/maintenance/dataset/datastructure/datastructure.py7
-rw-r--r--wqflask/maintenance/dataset/probesets/probesets.py45
2 files changed, 47 insertions, 5 deletions
diff --git a/wqflask/maintenance/dataset/datastructure/datastructure.py b/wqflask/maintenance/dataset/datastructure/datastructure.py
index ed429cb4..73e1c0d8 100644
--- a/wqflask/maintenance/dataset/datastructure/datastructure.py
+++ b/wqflask/maintenance/dataset/datastructure/datastructure.py
@@ -4,8 +4,8 @@ sys.path.append('..')
from utilities import db
-def get_type(inbredsetid):
- cursor=db.get_cursor()
+def get_probesetfreeze(inbredsetid):
+ cursor = db.get_cursor()
sql = """
SELECT ProbeSetFreeze.`Id`, ProbeSetFreeze.`Name`, ProbeSetFreeze.`FullName`
FROM ProbeSetFreeze, ProbeFreeze
@@ -14,7 +14,4 @@ def get_type(inbredsetid):
"""
cursor.execute(sql, (inbredsetid))
return cursor.fetchall()
-
-
-print get_type()
\ No newline at end of file
diff --git a/wqflask/maintenance/dataset/probesets/probesets.py b/wqflask/maintenance/dataset/probesets/probesets.py
new file mode 100644
index 00000000..7fa65786
--- /dev/null
+++ b/wqflask/maintenance/dataset/probesets/probesets.py
@@ -0,0 +1,45 @@
+import sys
+sys.path.append('.')
+sys.path.append('..')
+
+from utilities import db
+
+def fetch_probesetxref(probesetfreezeid):
+ cursor = db.get_cursor()
+ sql = """
+ SELECT ProbeSetXRef.`ProbeSetId`, ProbeSetXRef.`DataId`
+ FROM ProbeSetXRef
+ WHERE ProbeSetXRef.`ProbeSetFreezeId`=%s
+ """
+ cursor.execute(sql, (probesetfreezeid))
+ return cursor.fetchall()
+
+def fetch_probeset(probesetid):
+ cursor = db.get_cursor()
+ sql = """
+ SELECT *
+ FROM ProbeSet
+ WHERE ProbeSet.`Id`=%s
+ """
+ cursor.execute(sql, (probesetid))
+ return cursor.fetchone()
+
+def fetch_probesetdata(probesetdataid):
+ cursor = db.get_cursor()
+ sql = """
+ SELECT Strain.`Id`, Strain.`Name`, ProbeSetData.`value`
+ FROM ProbeSetData, Strain
+ WHERE ProbeSetData.`Id`=%s
+ AND ProbeSetData.`StrainId`=Strain.`Id`;
+ """
+ cursor.execute(sql, (probesetdataid))
+ return cursor.fetchall()
+
+results = fetch_probesetxref(112)
+for row in results:
+ print row
+ probesetid = row[0]
+ probesetdataid = row[1]
+ print fetch_probeset(probesetid)
+ print fetch_probesetdata(probesetdataid)
+ break \ No newline at end of file