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-rw-r--r--wqflask/maintenance/set_resource_defaults.py53
1 files changed, 30 insertions, 23 deletions
diff --git a/wqflask/maintenance/set_resource_defaults.py b/wqflask/maintenance/set_resource_defaults.py
index 4177c124..0f472494 100644
--- a/wqflask/maintenance/set_resource_defaults.py
+++ b/wqflask/maintenance/set_resource_defaults.py
@@ -37,20 +37,22 @@ import urllib.parse
from utility.logger import getLogger
logger = getLogger(__name__)
+
def parse_db_uri():
"""Converts a database URI to the db name, host name, user name, and password"""
parsed_uri = urllib.parse.urlparse(SQL_URI)
db_conn_info = dict(
- db = parsed_uri.path[1:],
- host = parsed_uri.hostname,
- user = parsed_uri.username,
- passwd = parsed_uri.password)
+ db=parsed_uri.path[1:],
+ host=parsed_uri.hostname,
+ user=parsed_uri.username,
+ passwd=parsed_uri.password)
print(db_conn_info)
return db_conn_info
+
def insert_probeset_resources(default_owner_id):
current_resources = Redis.hgetall("resources")
Cursor.execute(""" SELECT
@@ -63,20 +65,21 @@ def insert_probeset_resources(default_owner_id):
resource_ob = {}
resource_ob['name'] = resource[1]
resource_ob['owner_id'] = default_owner_id
- resource_ob['data'] = { "dataset" : str(resource[0])}
+ resource_ob['data'] = {"dataset": str(resource[0])}
resource_ob['type'] = "dataset-probeset"
if resource[2] < 1 and resource[3] > 0:
- resource_ob['default_mask'] = { "data": "view",
- "metadata": "view",
- "admin": "not-admin"}
+ resource_ob['default_mask'] = {"data": "view",
+ "metadata": "view",
+ "admin": "not-admin"}
else:
- resource_ob['default_mask'] = { "data": "no-access",
- "metadata": "no-access",
- "admin": "not-admin"}
+ resource_ob['default_mask'] = {"data": "no-access",
+ "metadata": "no-access",
+ "admin": "not-admin"}
resource_ob['group_masks'] = {}
add_resource(resource_ob, update=False)
+
def insert_publish_resources(default_owner_id):
current_resources = Redis.hgetall("resources")
Cursor.execute(""" SELECT
@@ -97,12 +100,12 @@ def insert_publish_resources(default_owner_id):
else:
resource_ob['name'] = str(resource[0])
resource_ob['owner_id'] = default_owner_id
- resource_ob['data'] = { "dataset" : str(resource[1]) ,
- "trait" : str(resource[0])}
+ resource_ob['data'] = {"dataset": str(resource[1]),
+ "trait": str(resource[0])}
resource_ob['type'] = "dataset-publish"
- resource_ob['default_mask'] = { "data": "view",
- "metadata": "view",
- "admin": "not-admin"}
+ resource_ob['default_mask'] = {"data": "view",
+ "metadata": "view",
+ "admin": "not-admin"}
resource_ob['group_masks'] = {}
@@ -110,6 +113,7 @@ def insert_publish_resources(default_owner_id):
else:
continue
+
def insert_geno_resources(default_owner_id):
current_resources = Redis.hgetall("resources")
Cursor.execute(""" SELECT
@@ -125,20 +129,21 @@ def insert_geno_resources(default_owner_id):
resource_ob['owner_id'] = "c5ce8c56-78a6-474f-bcaf-7129d97f56ae"
else:
resource_ob['owner_id'] = default_owner_id
- resource_ob['data'] = { "dataset" : str(resource[0]) }
+ resource_ob['data'] = {"dataset": str(resource[0])}
resource_ob['type'] = "dataset-geno"
if resource[2] < 1:
- resource_ob['default_mask'] = { "data": "view",
- "metadata": "view",
- "admin": "not-admin"}
+ resource_ob['default_mask'] = {"data": "view",
+ "metadata": "view",
+ "admin": "not-admin"}
else:
- resource_ob['default_mask'] = { "data": "no-access",
- "metadata": "no-access",
- "admin": "not-admin"}
+ resource_ob['default_mask'] = {"data": "no-access",
+ "metadata": "no-access",
+ "admin": "not-admin"}
resource_ob['group_masks'] = {}
add_resource(resource_ob, update=False)
+
def insert_resources(default_owner_id):
current_resources = get_resources()
print("START")
@@ -149,6 +154,7 @@ def insert_resources(default_owner_id):
insert_probeset_resources(default_owner_id)
print("AFTER PROBESET")
+
def main():
"""Generates and outputs (as json file) the data for the main dropdown menus on the home page"""
@@ -158,6 +164,7 @@ def main():
insert_resources(owner_id)
+
if __name__ == '__main__':
Conn = MySQLdb.Connect(**parse_db_uri())
Cursor = Conn.cursor()