diff options
Diffstat (limited to 'wqflask/maintenance/quantile_normalize.py')
| -rw-r--r-- | wqflask/maintenance/quantile_normalize.py | 16 |
1 files changed, 8 insertions, 8 deletions
diff --git a/wqflask/maintenance/quantile_normalize.py b/wqflask/maintenance/quantile_normalize.py index ac7689f5..88bb2cb5 100644 --- a/wqflask/maintenance/quantile_normalize.py +++ b/wqflask/maintenance/quantile_normalize.py @@ -21,10 +21,10 @@ def parse_db_uri(): parsed_uri = urllib.parse.urlparse(SQL_URI) db_conn_info = dict( - db=parsed_uri.path[1:], - host=parsed_uri.hostname, - user=parsed_uri.username, - passwd=parsed_uri.password) + db=parsed_uri.path[1:], + host=parsed_uri.hostname, + user=parsed_uri.username, + passwd=parsed_uri.password) print(db_conn_info) return db_conn_info @@ -70,10 +70,10 @@ def set_data(dataset_name): trait_name = line1.split('\t')[0] for i, sample in enumerate(sample_names): this_sample = { - "name": sample, - "value": line1.split('\t')[i + 1], - "qnorm": line2.split('\t')[i + 1] - } + "name": sample, + "value": line1.split('\t')[i + 1], + "qnorm": line2.split('\t')[i + 1] + } sample_list.append(this_sample) query = """SELECT Species.SpeciesName, InbredSet.InbredSetName, ProbeSetFreeze.FullName FROM Species, InbredSet, ProbeSetFreeze, ProbeFreeze, ProbeSetXRef, ProbeSet |