diff options
Diffstat (limited to 'wqflask/maintenance/get_group_samplelists.py')
-rwxr-xr-x | wqflask/maintenance/get_group_samplelists.py | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/wqflask/maintenance/get_group_samplelists.py b/wqflask/maintenance/get_group_samplelists.py index a9059fad..2d48ce78 100755 --- a/wqflask/maintenance/get_group_samplelists.py +++ b/wqflask/maintenance/get_group_samplelists.py @@ -28,7 +28,7 @@ def get_samplelist_from_geno(genofilename): genofile = gzip.open(genofilename) else: genofile = open(genofilename) - + for line in genofile: line = line.strip() if not line: @@ -36,9 +36,9 @@ def get_samplelist_from_geno(genofilename): if line.startswith(("#", "@")): continue break - + headers = line.split() - + if headers[3] == "Mb": samplelist = headers[4:] else: @@ -47,7 +47,7 @@ def get_samplelist_from_geno(genofilename): def get_samplelist_from_plink(genofilename): genofile = open(genofilename) - + samplelist = [] for line in genofile: line = line.split(" ") |