diff options
Diffstat (limited to 'wqflask/maintenance/geno_to_json.py')
| -rw-r--r-- | wqflask/maintenance/geno_to_json.py | 6 |
1 files changed, 2 insertions, 4 deletions
diff --git a/wqflask/maintenance/geno_to_json.py b/wqflask/maintenance/geno_to_json.py index fa0dcebd..ad3f2b72 100644 --- a/wqflask/maintenance/geno_to_json.py +++ b/wqflask/maintenance/geno_to_json.py @@ -25,10 +25,10 @@ from pprint import pformat as pf #from utility.tools import flat_files + class EmptyConfigurations(Exception): pass - class Marker: def __init__(self): self.name = None @@ -37,6 +37,7 @@ class Marker: self.Mb = None self.genotypes = [] + class ConvertGenoFile: def __init__(self, input_file, output_file): @@ -78,7 +79,6 @@ class ConvertGenoFile: # elif self.file_type == "snps": # self.process_snps_file() - def process_csv(self): for row_count, row in enumerate(self.process_rows()): row_items = row.split("\t") @@ -121,7 +121,6 @@ class ConvertGenoFile: # self.output_fh.write("\n") - def process_rows(self): for self.latest_row_pos, row in enumerate(self.input_fh): # if self.input_file.endswith(".geno.gz"): @@ -182,7 +181,6 @@ class ConvertGenoFile: # convertob = ConvertGenoFile(input_file, output_file) - if __name__ == "__main__": Old_Geno_Directory = """/export/local/home/zas1024/gn2-zach/genotype_files/genotype""" New_Geno_Directory = """/export/local/home/zas1024/gn2-zach/genotype_files/genotype/json""" |