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Diffstat (limited to 'wqflask/maintenance/dataset/specials1.py')
| -rw-r--r-- | wqflask/maintenance/dataset/specials1.py | 53 |
1 files changed, 0 insertions, 53 deletions
diff --git a/wqflask/maintenance/dataset/specials1.py b/wqflask/maintenance/dataset/specials1.py deleted file mode 100644 index 9159fd7f..00000000 --- a/wqflask/maintenance/dataset/specials1.py +++ /dev/null @@ -1,53 +0,0 @@ -import utilities -import datastructure -import genotypes -import probesets -import calculate - -""" -For: Rob, GeneNetwork -Date: 2014-02-04 -Function: - For BXD group, fetch probesets with given locus (mapping info). - -locus="rs3663871" -""" -def bxd_probesets_locus(locus, inbredsetid): - # - file = open('probesets_%s.txt' % (locus), 'w+') - file.write("GN Dataset ID\t") - file.write("Dataset Full Name\t") - file.write("ProbeSet Name\t") - file.write("Symbol\t") - file.write("ProbeSet Description\t") - file.write("Probe Target Description\t") - file.write("ProbeSet Chr\t") - file.write("ProbeSet Mb\t") - file.write("Mean\t") - file.write("LRS\t") - file.write("Geno Chr\t") - file.write("Geno Mb\t") - file.write("\n") - file.flush() - # - results = probesets.get_normalized_probeset(locus=locus, inbredsetid=inbredsetid) - for row in results: - file.write("%s\t" % (row[0])) - file.write("%s\t" % (utilities.clearspaces(row[2], default=''))) - file.write("%s\t" % (utilities.clearspaces(row[3], default=''))) - file.write("%s\t" % (utilities.clearspaces(row[4], default=''))) - file.write("%s\t" % (utilities.clearspaces(row[5], default=''))) - file.write("%s\t" % (utilities.clearspaces(row[6], default=''))) - file.write("%s\t" % (utilities.clearspaces(row[7], default=''))) - file.write("%s\t" % (row[8])) - file.write("%s\t" % (row[9])) - file.write("%s\t" % (row[10])) - file.write("%s\t" % (utilities.clearspaces(row[11], default=''))) - file.write("%s\t" % (row[12])) - file.write('\n') - file.flush() - file.close() - -locus='rs3663871' -inbredsetid=1 -bxd_probesets_locus(locus=locus, inbredsetid=inbredsetid) |