diff options
Diffstat (limited to 'wqflask/maintenance/dataset/probesets.py')
| -rw-r--r-- | wqflask/maintenance/dataset/probesets.py | 38 |
1 files changed, 0 insertions, 38 deletions
diff --git a/wqflask/maintenance/dataset/probesets.py b/wqflask/maintenance/dataset/probesets.py index d87240a2..97bb5bdf 100644 --- a/wqflask/maintenance/dataset/probesets.py +++ b/wqflask/maintenance/dataset/probesets.py @@ -1,5 +1,3 @@ -import sys - import utilities import datastructure import genotypes @@ -90,39 +88,3 @@ def get_normalized_probeset(locus, inbredsetid): # normalized_probesets.append(normalized_probeset) return normalized_probesets - -locus="rs3663871" -inbredsetid=1 - -results = get_normalized_probeset(locus=locus, inbredsetid=inbredsetid) -file = open('probesets_%s.txt' % (locus), 'w+') -file.write("GN Dataset ID\t") -file.write("Dataset Full Name\t") -file.write("ProbeSet Name\t") -file.write("Symbol\t") -file.write("ProbeSet Description\t") -file.write("Probe Target Description\t") -file.write("ProbeSet Chr\t") -file.write("ProbeSet Mb\t") -file.write("Mean\t") -file.write("LRS\t") -file.write("Geno Chr\t") -file.write("Geno Mb\t") -file.write("\n") -file.flush() -for row in results: - file.write("%s\t" % (row[0])) - file.write("%s\t" % (utilities.clearspaces(row[2], default=''))) - file.write("%s\t" % (utilities.clearspaces(row[3], default=''))) - file.write("%s\t" % (utilities.clearspaces(row[4], default=''))) - file.write("%s\t" % (utilities.clearspaces(row[5], default=''))) - file.write("%s\t" % (utilities.clearspaces(row[6], default=''))) - file.write("%s\t" % (utilities.clearspaces(row[7], default=''))) - file.write("%s\t" % (row[8])) - file.write("%s\t" % (row[9])) - file.write("%s\t" % (row[10])) - file.write("%s\t" % (utilities.clearspaces(row[11], default=''))) - file.write("%s\t" % (row[12])) - file.write('\n') - file.flush() -file.close() |