6 files changed, 0 insertions, 53 deletions
diff --git a/wqflask/maintenance/dataset/calculation/__init__.py b/wqflask/maintenance/dataset/calculation/__init__.py
deleted file mode 100644
index e69de29b..00000000
--- a/wqflask/maintenance/dataset/calculation/__init__.py
+++ /dev/null
diff --git a/wqflask/maintenance/dataset/calculation/correlation/__init__.py b/wqflask/maintenance/dataset/calculation/correlation/__init__.py
deleted file mode 100644
index e69de29b..00000000
--- a/wqflask/maintenance/dataset/calculation/correlation/__init__.py
+++ /dev/null
diff --git a/wqflask/maintenance/dataset/calculation/correlation/about.txt b/wqflask/maintenance/dataset/calculation/correlation/about.txt
deleted file mode 100644
index a12f8c47..00000000
--- a/wqflask/maintenance/dataset/calculation/correlation/about.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-BXD
-genotype, phenotype, mRNA expression
-correlation
-\ No newline at end of file
diff --git a/wqflask/maintenance/dataset/calculation/correlation/conf.ini b/wqflask/maintenance/dataset/calculation/correlation/conf.ini
deleted file mode 100644
index 9c23bb45..00000000
--- a/wqflask/maintenance/dataset/calculation/correlation/conf.ini
+++ /dev/null
@@ -1,2 +0,0 @@
-[configuration]
-genofile = /home/leiyan/gn/web/genotypes/BXD.geno
diff --git a/wqflask/maintenance/dataset/calculation/correlation/correlations.py b/wqflask/maintenance/dataset/calculation/correlation/correlations.py
deleted file mode 100644
index b089e446..00000000
--- a/wqflask/maintenance/dataset/calculation/correlation/correlations.py
+++ /dev/null
@@ -1,47 +0,0 @@
-# Author:               Lei Yan
-# Create Date:          2014-01-21
-# Last Update Date:     2014-01-24
-
-# import
-import sys
-import os
-import re
-import MySQLdb
-import ConfigParser
-
-def main(argv):
-
-    # load configuration from configuration file
-    config = ConfigParser.ConfigParser()
-    config.read(argv[1])
-    genofile = config.get('configuration', 'genofile')
-
-    # parse genofile
-    genotypes = []
-    file_geno = open(genofile, 'r')
-    for line in file_geno:
-        line = line.strip()
-        if line.startswith('#'):
-            continue
-        if line.startswith('@'):
-            continue
-        cells = line.split()
-        if line.startswith("Chr"):
-            strains = cells[4:]
-            continue
-        genotype = {}
-        genotype['chr'] = cells[0]
-        genotype['locus'] = cells[1]
-        genotype['cm'] = cells[2]
-        genotype['mb'] = cells[3]
-        genotype['values'] = cells[4:]
-        genotypes.append(genotype)
-    print "get %d strains:\t%s" % (len(strains), strains)
-    print "load %d genotypes" % len(genotypes)
-
-    # phenotypes
-
-# main
-if __name__ == "__main__":
-    main(sys.argv)
-    print "exit successfully"
diff --git a/wqflask/maintenance/dataset/calculation/correlation/run.sh b/wqflask/maintenance/dataset/calculation/correlation/run.sh
deleted file mode 100644
index eccfa507..00000000
--- a/wqflask/maintenance/dataset/calculation/correlation/run.sh
+++ /dev/null
@@ -1 +0,0 @@
-/usr/bin/python correlations.py conf.ini
-\ No newline at end of file