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-rw-r--r--wqflask/maintenance/convert_geno_to_bimbam.py2
1 files changed, 2 insertions, 0 deletions
diff --git a/wqflask/maintenance/convert_geno_to_bimbam.py b/wqflask/maintenance/convert_geno_to_bimbam.py
index a5d2d12a..8f331a06 100644
--- a/wqflask/maintenance/convert_geno_to_bimbam.py
+++ b/wqflask/maintenance/convert_geno_to_bimbam.py
@@ -140,6 +140,8 @@ class ConvertGenoFile(object):
key, _separater, value = row.partition(':')
key = key.strip()
value = value.strip()
+ if key == "@filler":
+ raise EmptyConfigurations
if key in self.haplotype_notation:
self.configurations[value] = self.haplotype_notation[key]
continue