diff options
Diffstat (limited to 'wqflask/db/webqtlDatabaseFunction.py')
| -rw-r--r-- | wqflask/db/webqtlDatabaseFunction.py | 5 |
1 files changed, 3 insertions, 2 deletions
diff --git a/wqflask/db/webqtlDatabaseFunction.py b/wqflask/db/webqtlDatabaseFunction.py index 7fc096a9..ba998e91 100644 --- a/wqflask/db/webqtlDatabaseFunction.py +++ b/wqflask/db/webqtlDatabaseFunction.py @@ -21,6 +21,7 @@ # This module is used by GeneNetwork project (www.genenetwork.org) from db.call import fetch1 +from utility.tools import USE_GN_SERVER from utility.logger import getLogger logger = getLogger(__name__ ) @@ -42,13 +43,13 @@ def retrieve_species(group): """Get the species of a group (e.g. returns string "mouse" on "BXD" """ - result = fetch1("select Species.Name from Species, InbredSet where InbredSet.Name = '%s' and InbredSet.SpeciesId = Species.Id" % (group),"/cross/"+group+".json",lambda r: r["species"])[0] + result = fetch1("select Species.Name from Species, InbredSet where InbredSet.Name = '%s' and InbredSet.SpeciesId = Species.Id" % (group),"/cross/"+group+".json",lambda r: (r["species"],))[0] logger.debug("retrieve_species result:",result) return result def retrieve_species_id(group): - result = fetch1("select SpeciesId from InbredSet where Name = '%s'" % (group),"/cross/"+group+".json",lambda r: r["species_id"])[0] + result = fetch1("select SpeciesId from InbredSet where Name = '%s'" % (group),"/cross/"+group+".json",lambda r: (r["species_id"],))[0] logger.debug("retrieve_species_id result:",result) return result |