diff options
Diffstat (limited to 'wqflask/db/webqtlDatabaseFunction.py')
| -rw-r--r-- | wqflask/db/webqtlDatabaseFunction.py | 17 |
1 files changed, 4 insertions, 13 deletions
diff --git a/wqflask/db/webqtlDatabaseFunction.py b/wqflask/db/webqtlDatabaseFunction.py index 2805febd..9ec650a4 100644 --- a/wqflask/db/webqtlDatabaseFunction.py +++ b/wqflask/db/webqtlDatabaseFunction.py @@ -21,27 +21,18 @@ # This module is used by GeneNetwork project (www.genenetwork.org) from db.call import fetch1 -from utility.tools import USE_GN_SERVER -from utility.logger import getLogger -logger = getLogger(__name__ ) - -########################################################################### -#output: cursor instance -#function: connect to database and return cursor instance -########################################################################### def retrieve_species(group): """Get the species of a group (e.g. returns string "mouse" on "BXD" """ - result = fetch1("select Species.Name from Species, InbredSet where InbredSet.Name = '%s' and InbredSet.SpeciesId = Species.Id" % (group), "/cross/"+group+".json", lambda r: (r["species"],))[0] - logger.debug("retrieve_species result:", result) + result = fetch1("select Species.Name from Species, InbredSet where InbredSet.Name = '%s' and InbredSet.SpeciesId = Species.Id" % ( + group), "/cross/" + group + ".json", lambda r: (r["species"],))[0] return result def retrieve_species_id(group): - - result = fetch1("select SpeciesId from InbredSet where Name = '%s'" % (group), "/cross/"+group+".json", lambda r: (r["species_id"],))[0] - logger.debug("retrieve_species_id result:", result) + result = fetch1("select SpeciesId from InbredSet where Name = '%s'" % ( + group), "/cross/" + group + ".json", lambda r: (r["species_id"],))[0] return result |