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-rwxr-xr-xwqflask/base/data_set.py8
-rw-r--r--wqflask/base/species.py16
2 files changed, 22 insertions, 2 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index 2182fe9e..612b9209 100755
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -30,6 +30,7 @@ from htmlgen import HTMLgen2 as HT
import reaper
import webqtlConfig
+from base import species
from dbFunction import webqtlDatabaseFunction
from utility import webqtlUtil
@@ -145,7 +146,7 @@ class DataSet(object):
def __init__(self, name):
- assert name
+ assert name, "Need a name"
self.name = name
self.id = None
self.type = None
@@ -155,7 +156,10 @@ class DataSet(object):
self.check_confidentiality()
self.retrieve_other_names()
- self.group = DatasetGroup(self) # sets self.group and self.group_id
+
+ self.species = species.TheSpecies(self)
+ self.group = DatasetGroup(self) # sets self.group and self.group_id and gets genotype
+
def get_desc(self):
diff --git a/wqflask/base/species.py b/wqflask/base/species.py
new file mode 100644
index 00000000..98941ce5
--- /dev/null
+++ b/wqflask/base/species.py
@@ -0,0 +1,16 @@
+from __future__ import print_function, division
+
+
+class TheSpecies(object):
+ def __init__(self, dataset):
+ self.dataset = dataset
+
+ @property
+ def chromosomes(self):
+ chromosomes = [("All", -1)]
+
+ for counter, genotype in enumerate(self.dataset.group.genotype):
+ if len(genotype) > 1:
+ chromosomes.append((genotype.name, counter))
+
+ return chromosomes