diff options
Diffstat (limited to 'wqflask/base')
-rwxr-xr-x | wqflask/base/data_set.py | 8 | ||||
-rw-r--r-- | wqflask/base/species.py | 16 |
2 files changed, 22 insertions, 2 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index 2182fe9e..612b9209 100755 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -30,6 +30,7 @@ from htmlgen import HTMLgen2 as HT import reaper import webqtlConfig +from base import species from dbFunction import webqtlDatabaseFunction from utility import webqtlUtil @@ -145,7 +146,7 @@ class DataSet(object): def __init__(self, name): - assert name + assert name, "Need a name" self.name = name self.id = None self.type = None @@ -155,7 +156,10 @@ class DataSet(object): self.check_confidentiality() self.retrieve_other_names() - self.group = DatasetGroup(self) # sets self.group and self.group_id + + self.species = species.TheSpecies(self) + self.group = DatasetGroup(self) # sets self.group and self.group_id and gets genotype + def get_desc(self): diff --git a/wqflask/base/species.py b/wqflask/base/species.py new file mode 100644 index 00000000..98941ce5 --- /dev/null +++ b/wqflask/base/species.py @@ -0,0 +1,16 @@ +from __future__ import print_function, division + + +class TheSpecies(object): + def __init__(self, dataset): + self.dataset = dataset + + @property + def chromosomes(self): + chromosomes = [("All", -1)] + + for counter, genotype in enumerate(self.dataset.group.genotype): + if len(genotype) > 1: + chromosomes.append((genotype.name, counter)) + + return chromosomes |