diff options
Diffstat (limited to 'wqflask/base')
| -rwxr-xr-x | wqflask/base/data_set.py | 6 | ||||
| -rwxr-xr-x | wqflask/base/trait.py | 2 | ||||
| -rwxr-xr-x | wqflask/base/webqtlConfig.py | 2 |
3 files changed, 6 insertions, 4 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index 1520b180..9b0a3dcc 100755 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -385,7 +385,7 @@ class PhenotypeDataSet(DataSet): continue # for now if not webqtlUtil.hasAccessToConfidentialPhenotypeTrait(privilege=self.privilege, userName=self.userName, authorized_users=this_trait.authorized_users): description = this_trait.pre_publication_description - this_trait.description_display = description + this_trait.description_display = unicode(description, "utf8") if not this_trait.year.isdigit(): this_trait.pubmed_text = "N/A" @@ -735,8 +735,10 @@ class MrnaAssayDataSet(DataSet): trait_location_value = 1000000 if this_trait.chr and this_trait.mb: + print("this_trait.chr is:", this_trait.chr) + print("this_trait.mb is:", this_trait.mb) try: - trait_location_value = int(this_trait.chr)*1000 + this_trait.mb + trait_location_value = float(this_trait.chr)*1000 + float(this_trait.mb) except: if this_trait.chr.upper() == 'X': trait_location_value = 20*1000 + this_trait.mb diff --git a/wqflask/base/trait.py b/wqflask/base/trait.py index 7c1c035c..dde8b8d8 100755 --- a/wqflask/base/trait.py +++ b/wqflask/base/trait.py @@ -302,7 +302,7 @@ class GeneralTrait: #XZ: assign SQL query result to trait attributes. for i, field in enumerate(self.dataset.display_fields): - setattr(self, field, traitInfo[i]) + setattr(self, field, str(traitInfo[i])) if self.dataset.type == 'Publish': self.confidential = 0 diff --git a/wqflask/base/webqtlConfig.py b/wqflask/base/webqtlConfig.py index 49afb631..a811c3cd 100755 --- a/wqflask/base/webqtlConfig.py +++ b/wqflask/base/webqtlConfig.py @@ -52,7 +52,7 @@ ENSEMBLETRANSCRIPT_URL="http://useast.ensembl.org/Mus_musculus/Lucene/Details?sp SECUREDIR = GNROOT + 'secure/' COMMON_LIB = GNROOT + 'support/admin' HTMLPATH = GNROOT + 'web/' -PYLMM_PATH = HTMLPATH + 'plink/' +PYLMM_PATH = '/home/zas1024/' SNP_PATH = '/mnt/xvdf1/snps/' IMGDIR = HTMLPATH +'image/' IMAGESPATH = HTMLPATH + 'images/' |