diff options
Diffstat (limited to 'wqflask/base')
-rwxr-xr-x | wqflask/base/data_set.py | 15 |
1 files changed, 14 insertions, 1 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index 5d21c901..16f9da5d 100755 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -1078,7 +1078,20 @@ class MrnaAssayDataSet(DataSet): def retrieve_gene_symbols(self): query = """ - select ProbeSet.Name, ProbeSet.Symbol + select ProbeSet.Name, ProbeSet.Symbol, ProbeSet.GeneId + from ProbeSet,ProbeSetXRef + where ProbeSetXRef.ProbeSetFreezeId = %s and + ProbeSetXRef.ProbeSetId=ProbeSet.Id; + """ % (self.id) + results = g.db.execute(query).fetchall() + symbol_dict = {} + for item in results: + symbol_dict[item[0]] = item[1] + return symbol_dict + + def retrieve_gene_ids(self): + query = """ + select ProbeSet.Name, ProbeSet.GeneId from ProbeSet,ProbeSetXRef where ProbeSetXRef.ProbeSetFreezeId = %s and ProbeSetXRef.ProbeSetId=ProbeSet.Id; |