diff options
Diffstat (limited to 'wqflask/base')
| -rw-r--r-- | wqflask/base/data_set.py | 2 | ||||
| -rw-r--r-- | wqflask/base/webqtlConfig.py | 1 |
2 files changed, 2 insertions, 1 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index 6649f8af..a4eaaa2e 100644 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -332,7 +332,7 @@ class DatasetGroup(object): if check_plink_gemma(): marker_class = HumanMarkers else: - marker_class = Markers + marker_class = Markers if self.genofile: self.markers = marker_class(self.genofile[:-5]) diff --git a/wqflask/base/webqtlConfig.py b/wqflask/base/webqtlConfig.py index 1ef2bc26..1e66e957 100644 --- a/wqflask/base/webqtlConfig.py +++ b/wqflask/base/webqtlConfig.py @@ -82,6 +82,7 @@ assert_writable_dir(GENERATED_TEXT_DIR) # Flat file directories GENODIR = flat_files('genotype')+'/' assert_dir(GENODIR) +assert_dir(GENODIR+'bimbam') # for gemma # JSON genotypes are OBSOLETE JSON_GENODIR = flat_files('genotype/json')+'/' |