diff options
Diffstat (limited to 'wqflask/base')
| -rwxr-xr-x | wqflask/base/data_set.py | 1 | ||||
| -rwxr-xr-x | wqflask/base/trait.py | 35 |
2 files changed, 0 insertions, 36 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index aaea7ec3..6cabadb1 100755 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -166,7 +166,6 @@ class Markers(object): for marker in markers: if (marker['chr'] != "X") and (marker['chr'] != "Y"): marker['chr'] = int(marker['chr']) - print("Mb:", marker['Mb']) marker['Mb'] = float(marker['Mb']) self.markers = markers diff --git a/wqflask/base/trait.py b/wqflask/base/trait.py index eb9bc940..ff149ba3 100755 --- a/wqflask/base/trait.py +++ b/wqflask/base/trait.py @@ -221,32 +221,6 @@ class GeneralTrait(object): if samplelist == None: samplelist = [] - #assert self.dataset - - #if self.cellid: - # #Probe Data - # query = ''' - # SELECT - # Strain.Name, ProbeData.value, ProbeSE.error, ProbeData.Id - # FROM - # (ProbeData, ProbeFreeze, ProbeSetFreeze, ProbeXRef, - # Strain, Probe, ProbeSet) - # left join ProbeSE on - # (ProbeSE.DataId = ProbeData.Id AND ProbeSE.StrainId = ProbeData.StrainId) - # WHERE - # Probe.Name = '%s' AND ProbeSet.Name = '%s' AND - # Probe.ProbeSetId = ProbeSet.Id AND - # ProbeXRef.ProbeId = Probe.Id AND - # ProbeXRef.ProbeFreezeId = ProbeFreeze.Id AND - # ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id AND - # ProbeSetFreeze.Name = '%s' AND - # ProbeXRef.DataId = ProbeData.Id AND - # ProbeData.StrainId = Strain.Id - # Order BY - # Strain.Name - # ''' % (self.cellid, self.name, self.dataset.name) - # - #else: results = self.dataset.retrieve_sample_data(self.name) # Todo: is this necessary? If not remove @@ -260,15 +234,6 @@ class GeneralTrait(object): if not samplelist or (samplelist and name in samplelist): self.data[name] = webqtlCaseData(*item) #name, value, variance, num_cases) - #def keys(self): - # return self.__dict__.keys() - # - #def has_key(self, key): - # return self.__dict__.has_key(key) - # - #def items(self): - # return self.__dict__.items() - def retrieve_info(self, get_qtl_info=False): assert self.dataset, "Dataset doesn't exist" if self.dataset.type == 'Publish': |