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-rwxr-xr-xwqflask/base/data_set.py2
-rwxr-xr-xwqflask/base/trait.py6
2 files changed, 4 insertions, 4 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index 4c5c46a5..0c7676c4 100755
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -809,7 +809,7 @@ class MrnaAssayDataSet(DataSet):
this_trait.LRS_location_repr = 'Chr %s: %.4f Mb' % (lrs_chr, float(lrs_mb))
- def convert_location_to_value(chromosome, mb):
+ def convert_location_to_value(self, chromosome, mb):
try:
location_value = int(chromosome)*1000 + float(mb)
except ValueError:
diff --git a/wqflask/base/trait.py b/wqflask/base/trait.py
index 5fde114f..53f41779 100755
--- a/wqflask/base/trait.py
+++ b/wqflask/base/trait.py
@@ -23,7 +23,7 @@ class GeneralTrait(object):
"""
def __init__(self, **kw):
- print("in GeneralTrait")
+ #print("in GeneralTrait")
self.dataset = kw.get('dataset') # database name
self.name = kw.get('name') # Trait ID, ProbeSet ID, Published ID, etc.
self.cellid = kw.get('cellid')
@@ -269,7 +269,7 @@ class GeneralTrait(object):
escape(self.dataset.name),
escape(self.name))
traitInfo = g.db.execute(query).fetchone()
- print("traitInfo is: ", pf(traitInfo))
+ #print("traitInfo is: ", pf(traitInfo))
#XZ, 05/08/2009: We also should use Geno.Id to find marker instead of just using Geno.Name
# to avoid the problem of same marker name from different species.
elif self.dataset.type == 'Geno':
@@ -287,7 +287,7 @@ class GeneralTrait(object):
escape(self.dataset.name),
escape(self.name))
traitInfo = g.db.execute(query).fetchone()
- print("traitInfo is: ", pf(traitInfo))
+ #print("traitInfo is: ", pf(traitInfo))
else: #Temp type
query = """SELECT %s FROM %s WHERE Name = %s
""" % (string.join(self.dataset.display_fields,','),