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-rwxr-xr-xwqflask/base/data_set.py13
-rwxr-xr-xwqflask/base/webqtlCaseData.py1
2 files changed, 9 insertions, 5 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index 2a79dc9c..e6bd61c1 100755
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -563,12 +563,15 @@ class DataSet(object):
""".format(*mescape(self.type, item, item, self.type, item, item))
if self.type == "Publish":
+ #query += """
+ # WHERE {}XRef.InbredSetId = '{}'
+ # """.format(*mescape(self.type, self.group.name))
+
query += """
- WHERE {}XRef.PublicationId = {}Freeze.Id
- and {}Freeze.Name = '{}'
+ WHERE {}XRef.InbredSetId = '{}'
and {}.Id = {}XRef.{}Id
order by {}.Id
- """.format(*mescape(self.type, self.type, self.type, self.name,
+ """.format(*mescape(self.type, self.group.name,
dataset_type, self.type, dataset_type, dataset_type))
else:
query += """
@@ -579,10 +582,10 @@ class DataSet(object):
""".format(*mescape(self.type, self.type, self.type, self.type,
self.name, dataset_type, self.type, self.type, dataset_type))
- #print("trait data query: ", query)
+ print("trait data query: ", query)
results = g.db.execute(query).fetchall()
- #print("query results:", results)
+ print("query results:", results)
trait_sample_data.append(results)
trait_count = len(trait_sample_data[0])
diff --git a/wqflask/base/webqtlCaseData.py b/wqflask/base/webqtlCaseData.py
index 42763aed..6dc0c145 100755
--- a/wqflask/base/webqtlCaseData.py
+++ b/wqflask/base/webqtlCaseData.py
@@ -34,6 +34,7 @@ class webqtlCaseData(object):
self.value = value # Trait Value
self.variance = variance # Trait Variance
self.num_cases = num_cases # Number of individuals/cases
+ self.z_score = None
self.extra_attributes = None
self.this_id = None # Set a sane default (can't be just "id" cause that's a reserved word)
self.outlier = None # Not set to True/False until later