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-rw-r--r--wqflask/base/data_set.py6
-rw-r--r--wqflask/base/mrna_assay_tissue_data.py2
-rw-r--r--wqflask/base/species.py6
-rw-r--r--wqflask/base/trait.py2
4 files changed, 8 insertions, 8 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index 1ae138d2..3183363b 100644
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -220,7 +220,7 @@ def create_datasets_list():
return datasets
-class Markers(object):
+class Markers:
"""Todo: Build in cacheing so it saves us reading the same file more than once"""
def __init__(self, name):
@@ -316,7 +316,7 @@ class HumanMarkers(Markers):
super(HumanMarkers, self).add_pvalues(p_values)
-class DatasetGroup(object):
+class DatasetGroup:
"""
Each group has multiple datasets; each species has multiple groups.
@@ -540,7 +540,7 @@ def datasets(group_name, this_group=None):
return dataset_menu
-class DataSet(object):
+class DataSet:
"""
DataSet class defines a dataset in webqtl, can be either Microarray,
Published phenotype, genotype, or user input dataset(temp)
diff --git a/wqflask/base/mrna_assay_tissue_data.py b/wqflask/base/mrna_assay_tissue_data.py
index f1929518..1f8224af 100644
--- a/wqflask/base/mrna_assay_tissue_data.py
+++ b/wqflask/base/mrna_assay_tissue_data.py
@@ -11,7 +11,7 @@ from utility.db_tools import escape
from utility.logger import getLogger
logger = getLogger(__name__ )
-class MrnaAssayTissueData(object):
+class MrnaAssayTissueData:
def __init__(self, gene_symbols=None):
self.gene_symbols = gene_symbols
diff --git a/wqflask/base/species.py b/wqflask/base/species.py
index 2771d116..eae3325a 100644
--- a/wqflask/base/species.py
+++ b/wqflask/base/species.py
@@ -6,7 +6,7 @@ from flask import Flask, g
from utility.logger import getLogger
logger = getLogger(__name__ )
-class TheSpecies(object):
+class TheSpecies:
def __init__(self, dataset=None, species_name=None):
if species_name != None:
self.name = species_name
@@ -15,7 +15,7 @@ class TheSpecies(object):
self.dataset = dataset
self.chromosomes = Chromosomes(dataset=self.dataset)
-class IndChromosome(object):
+class IndChromosome:
def __init__(self, name, length):
self.name = name
self.length = length
@@ -25,7 +25,7 @@ class IndChromosome(object):
"""Chromosome length in megabases"""
return self.length / 1000000
-class Chromosomes(object):
+class Chromosomes:
def __init__(self, dataset=None, species=None):
self.chromosomes = collections.OrderedDict()
if species != None:
diff --git a/wqflask/base/trait.py b/wqflask/base/trait.py
index a9223a32..968b6d4b 100644
--- a/wqflask/base/trait.py
+++ b/wqflask/base/trait.py
@@ -51,7 +51,7 @@ def create_trait(**kw):
return None
-class GeneralTrait(object):
+class GeneralTrait:
"""
Trait class defines a trait in webqtl, can be either Microarray,
Published phenotype, genotype, or user input trait