diff options
Diffstat (limited to 'wqflask/base')
| -rwxr-xr-x | wqflask/base/data_set.py | 2 | ||||
| -rwxr-xr-x | wqflask/base/trait.py | 12 |
2 files changed, 12 insertions, 2 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index 8296adea..fbe78d5d 100755 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -629,7 +629,7 @@ class PhenotypeDataSet(DataSet): description = this_trait.pre_publication_description - this_trait.description_display = description + this_trait.description_display = description.strip() if not this_trait.year.isdigit(): this_trait.pubmed_text = "N/A" diff --git a/wqflask/base/trait.py b/wqflask/base/trait.py index 74bc07bb..9e4f0944 100755 --- a/wqflask/base/trait.py +++ b/wqflask/base/trait.py @@ -43,7 +43,7 @@ class GeneralTrait(object): self.sequence = kw.get('sequence') # Blat sequence, available for ProbeSet self.data = kw.get('data', {}) - # Sets defaultst + # Sets defaults self.locus = None self.lrs = None self.pvalue = None @@ -63,6 +63,16 @@ class GeneralTrait(object): # So we could add a simple if statement to short-circuit this if necessary self.retrieve_info(get_qtl_info=get_qtl_info) self.retrieve_sample_data() + + + def jsonable(self): + """Return a dict suitable for using as json + + Actual turning into json doesn't happen here though""" + return dict(name=self.name, + description=self.description_display, + mean=self.mean) + def get_info(self): """For lots of traits just use get_trait_info in dataset instead...that will be way |