diff options
Diffstat (limited to 'wqflask/base')
| -rw-r--r-- | wqflask/base/trait.py | 30 |
1 files changed, 8 insertions, 22 deletions
diff --git a/wqflask/base/trait.py b/wqflask/base/trait.py index 7fc016f3..4c3e790c 100644 --- a/wqflask/base/trait.py +++ b/wqflask/base/trait.py @@ -49,7 +49,6 @@ def create_trait(**kw): if "view" in permissions['data']: the_trait = GeneralTrait(**kw) if the_trait.dataset.type != "Temp": - the_trait = retrieve_trait_info(the_trait, the_trait.dataset, get_qtl_info=kw.get('get_qtl_info')) return the_trait else: @@ -144,6 +143,7 @@ class GeneralTrait(object): formatted = self.post_publication_description else: formatted = "Not available" + return formatted @property @@ -388,27 +388,14 @@ def retrieve_trait_info(trait, dataset, get_qtl_info=False): try: response = requests.get(the_url).content - if response.strip() == "no-access": - trait.view = False - return trait - else: - trait_info = json.loads(response) - except: - resource_info = get_resource_info(resource_id) - if resource_info: - default_permissions = resource_info['default_mask']['data'] - else: - default_permissions = webqtlConfig.DEFAULT_PRIVILEGES - if 'view' not in default_permissions: - trait.view = False - return trait - + trait_info = json.loads(response) + except: #ZS: I'm assuming the trait is viewable if the try fails for some reason; it should never reach this point unless the user has privileges, since that's dealt with in create_trait if dataset.type == 'Publish': query = """ SELECT - PublishXRef.Id, Publication.PubMed_ID, + PublishXRef.Id, InbredSet.InbredSetCode, Publication.PubMed_ID, Phenotype.Pre_publication_description, Phenotype.Post_publication_description, Phenotype.Original_description, - Phenotype.Pre_publication_abbreviation, Phenotype.Post_publication_abbreviation, + Phenotype.Pre_publication_abbreviation, Phenotype.Post_publication_abbreviation, PublishXRef.mean, Phenotype.Lab_code, Phenotype.Submitter, Phenotype.Owner, Phenotype.Authorized_Users, Publication.Authors, Publication.Title, Publication.Abstract, Publication.Journal, Publication.Volume, Publication.Pages, @@ -472,11 +459,10 @@ def retrieve_trait_info(trait, dataset, get_qtl_info=False): if trait_info: trait.haveinfo = True - for i, field in enumerate(dataset.display_fields): - holder = trait_info[i] - #if isinstance(trait_info[i], basestring): - # holder = holder.encode('latin1') + holder = trait_info[i] + # if isinstance(trait_info[i], basestring): + # holder = unicode(holder.strip(codecs.BOM_UTF8), 'utf-8', "ignore") setattr(trait, field, holder) if dataset.type == 'Publish': |