diff options
Diffstat (limited to 'wqflask/base/webqtlTrait.py')
| -rwxr-xr-x | wqflask/base/webqtlTrait.py | 15 |
1 files changed, 8 insertions, 7 deletions
diff --git a/wqflask/base/webqtlTrait.py b/wqflask/base/webqtlTrait.py index 1dceba08..9763e441 100755 --- a/wqflask/base/webqtlTrait.py +++ b/wqflask/base/webqtlTrait.py @@ -30,9 +30,9 @@ class webqtlTrait: self.cellid = kw.get('cellid', None) self.identification = kw.get('identification', 'un-named trait') self.group = kw.get('group', None) - self.haveinfo = kw.get(haveinfo, False) - self.sequence = kw.get(sequence, None) # Blat sequence, available for ProbeSet - self.data = kw.get(data, {}) + self.haveinfo = kw.get('haveinfo', False) + self.sequence = kw.get('sequence', None) # Blat sequence, available for ProbeSet + self.data = kw.get('data', {}) if kw.get('fullname'): name2 = value.split("::") @@ -381,7 +381,7 @@ class webqtlTrait: # return self.__dict__.items() def retrieveInfo(self, QTL = None): - assert self.dataset and self.cursor + assert self.dataset if self.dataset.type == 'Publish': #self.dataset.DisField = ['Name','PubMed_ID','Phenotype','Abbreviation','Authors','Title',\ # 'Abstract', 'Journal','Volume','Pages','Month','Year','Sequence',\ @@ -434,10 +434,11 @@ class webqtlTrait: Geno.Name = '%s' """ % (display_fields_string, self.dataset.name, self.name) else: #Temp type - query = 'SELECT %s FROM %s WHERE Name = "%s"' % \ - (string.join(self.dataset.display_fields,','), self.dataset.type, self.name) - + traitInfo = g.db.execute("""SELECT %s FROM %s WHERE Name = '%s' + """, (string.join(self.dataset.display_fields,','), + self.dataset.type, self.name)).fetchone() + self.cursor.execute(query) traitInfo = self.cursor.fetchone() if traitInfo: |