diff options
Diffstat (limited to 'wqflask/base/webqtlTrait.py')
| -rwxr-xr-x | wqflask/base/webqtlTrait.py | 12 |
1 files changed, 6 insertions, 6 deletions
diff --git a/wqflask/base/webqtlTrait.py b/wqflask/base/webqtlTrait.py index 46af6683..51d36ab2 100755 --- a/wqflask/base/webqtlTrait.py +++ b/wqflask/base/webqtlTrait.py @@ -226,7 +226,7 @@ class webqtlTrait: def retrieveData(self, samplelist=None): - + if samplelist == None: samplelist = [] assert self.db and self.cursor @@ -331,7 +331,7 @@ class webqtlTrait: self.cursor.execute(query) results = self.cursor.fetchall() self.data.clear() - + if results: self.mysqlid = results[0][-1] #if samplelist: @@ -345,7 +345,7 @@ class webqtlTrait: name = item[0] self.data[name] = webqtlCaseData(*item) #name, value, variance, num_cases) #end for - # else: + # else: # for item in results: # val = item[1] # if val != None: @@ -604,7 +604,7 @@ class webqtlTrait: formatted += "; " + self.probe_target_description else: formatted = "Not available" - return formatted + return formatted.capitalize() @property def alias_fmt(self): @@ -660,7 +660,7 @@ class webqtlTrait: else: return dict(name = self.db.fullname, url = webqtlConfig.INFOPAGEHREF % self.db.name) - + def calculate_correlation(self, values, method): """Calculate the correlation value and p value according to the method specified""" @@ -693,4 +693,4 @@ class webqtlTrait: else: ZValue = 0.5*log((1.0+self.correlation)/(1.0-self.correlation)) ZValue = ZValue*sqrt(self.overlap-3) - self.p_value = 2.0*(1.0 - reaper.normp(abs(ZValue))) + self.p_value = 2.0*(1.0 - reaper.normp(abs(ZValue))) |