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-rwxr-xr-xwqflask/base/trait.py25
1 files changed, 24 insertions, 1 deletions
diff --git a/wqflask/base/trait.py b/wqflask/base/trait.py
index 9e4f0944..712d9af5 100755
--- a/wqflask/base/trait.py
+++ b/wqflask/base/trait.py
@@ -12,10 +12,13 @@ from base.data_set import create_dataset
from dbFunction import webqtlDatabaseFunction
from utility import webqtlUtil
+from wqflask import app
+
+import simplejson as json
from MySQLdb import escape_string as escape
from pprint import pformat as pf
-from flask import Flask, g
+from flask import Flask, g, request
def print_mem(stage=""):
mem = resource.getrusage(resource.RUSAGE_SELF).ru_maxrss
@@ -70,6 +73,7 @@ class GeneralTrait(object):
Actual turning into json doesn't happen here though"""
return dict(name=self.name,
+ dataset=self.dataset.name,
description=self.description_display,
mean=self.mean)
@@ -626,3 +630,22 @@ class GeneralTrait(object):
ZValue = 0.5*log((1.0+self.correlation)/(1.0-self.correlation))
ZValue = ZValue*sqrt(self.overlap-3)
self.p_value = 2.0*(1.0 - reaper.normp(abs(ZValue)))
+
+
+
+@app.route("/trait/get_sample_data")
+def get_sample_data():
+ params = request.args
+ trait = params['trait']
+ dataset = params['dataset']
+
+ trait_ob = GeneralTrait(name=trait, dataset_name=dataset)
+
+ return json.dumps({key: value.value for key, value in trait_ob.data.iteritems() })
+
+ #jsonable_sample_data = {}
+ #for sample in trait_ob.data.iteritems():
+ # jsonable_sample_data[sample] = trait_ob.data[sample].value
+ #
+ #return jsonable_sample_data
+ \ No newline at end of file