diff options
Diffstat (limited to 'wqflask/base/trait.py')
| -rwxr-xr-x | wqflask/base/trait.py | 15 |
1 files changed, 9 insertions, 6 deletions
diff --git a/wqflask/base/trait.py b/wqflask/base/trait.py index db76ddea..c893c887 100755 --- a/wqflask/base/trait.py +++ b/wqflask/base/trait.py @@ -319,8 +319,11 @@ class GeneralTrait(object): #XZ: assign SQL query result to trait attributes. for i, field in enumerate(self.dataset.display_fields): - print(" mike: {} -> {} - {}".format(field, type(trait_info[i]), trait_info[i])) - setattr(self, field, trait_info[i]) + #print(" mike: {} -> {} - {}".format(field, type(trait_info[i]), trait_info[i])) + holder = trait_info[i] + if isinstance(trait_info[i], basestring): + holder = unicode(trait_info[i], "utf8", "ignore") + setattr(self, field, holder) if self.dataset.type == 'Publish': self.confidential = 0 @@ -329,9 +332,9 @@ class GeneralTrait(object): self.homologeneid = None - print("self.geneid is:", self.geneid) - print(" type:", type(self.geneid)) - print("self.dataset.group.name is:", self.dataset.group.name) + #print("self.geneid is:", self.geneid) + #print(" type:", type(self.geneid)) + #print("self.dataset.group.name is:", self.dataset.group.name) if self.dataset.type == 'ProbeSet' and self.dataset.group and self.geneid: #XZ, 05/26/2010: From time to time, this query get error message because some geneid values in database are not number. #XZ: So I have to test if geneid is number before execute the query. @@ -600,4 +603,4 @@ class GeneralTrait(object): else: ZValue = 0.5*log((1.0+self.correlation)/(1.0-self.correlation)) ZValue = ZValue*sqrt(self.overlap-3) - self.p_value = 2.0*(1.0 - reaper.normp(abs(ZValue))) + self.p_value = 2.0*(1.0 - reaper.normp(abs(ZValue)))
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