diff options
Diffstat (limited to 'wqflask/base/species.py')
| -rw-r--r-- | wqflask/base/species.py | 8 |
1 files changed, 6 insertions, 2 deletions
diff --git a/wqflask/base/species.py b/wqflask/base/species.py index eae3325a..e3c29916 100644 --- a/wqflask/base/species.py +++ b/wqflask/base/species.py @@ -4,7 +4,8 @@ from flask import Flask, g from utility.logger import getLogger -logger = getLogger(__name__ ) +logger = getLogger(__name__) + class TheSpecies: def __init__(self, dataset=None, species_name=None): @@ -15,6 +16,7 @@ class TheSpecies: self.dataset = dataset self.chromosomes = Chromosomes(dataset=self.dataset) + class IndChromosome: def __init__(self, name, length): self.name = name @@ -25,6 +27,7 @@ class IndChromosome: """Chromosome length in megabases""" return self.length / 1000000 + class Chromosomes: def __init__(self, dataset=None, species=None): self.chromosomes = collections.OrderedDict() @@ -52,4 +55,5 @@ class Chromosomes: results = g.db.execute(query).fetchall() for item in results: - self.chromosomes[item.OrderId] = IndChromosome(item.Name, item.Length) + self.chromosomes[item.OrderId] = IndChromosome( + item.Name, item.Length) |