diff options
Diffstat (limited to 'wqflask/base/mrna_assay_tissue_data.py')
| -rwxr-xr-x | wqflask/base/mrna_assay_tissue_data.py | 10 |
1 files changed, 8 insertions, 2 deletions
diff --git a/wqflask/base/mrna_assay_tissue_data.py b/wqflask/base/mrna_assay_tissue_data.py index 54a7ce8e..ba82057a 100755 --- a/wqflask/base/mrna_assay_tissue_data.py +++ b/wqflask/base/mrna_assay_tissue_data.py @@ -19,7 +19,7 @@ class MrnaAssayTissueData(object): if self.gene_symbols == None: self.gene_symbols = [] - print("self.gene_symbols:", self.gene_symbols) + #print("self.gene_symbols:", self.gene_symbols) self.data = collections.defaultdict(Bunch) @@ -57,9 +57,15 @@ class MrnaAssayTissueData(object): results = g.db.execute(query).fetchall() + lower_symbols = [] + for gene_symbol in gene_symbols: + if gene_symbol != None: + lower_symbols.append(gene_symbol.lower()) + for result in results: symbol = result[0] - if symbol.lower() in [gene_symbol.lower() for gene_symbol in gene_symbols]: + #if symbol.lower() in [gene_symbol.lower() for gene_symbol in gene_symbols]: + if symbol.lower() in lower_symbols: #gene_symbols.append(symbol) symbol = symbol.lower() |