diff options
Diffstat (limited to 'wqflask/base/mrna_assay_tissue_data.py')
| -rw-r--r-- | wqflask/base/mrna_assay_tissue_data.py | 7 |
1 files changed, 5 insertions, 2 deletions
diff --git a/wqflask/base/mrna_assay_tissue_data.py b/wqflask/base/mrna_assay_tissue_data.py index 039f5d1f..5511af06 100644 --- a/wqflask/base/mrna_assay_tissue_data.py +++ b/wqflask/base/mrna_assay_tissue_data.py @@ -11,6 +11,9 @@ from MySQLdb import escape_string as escape from pprint import pformat as pf +from utility.logger import getLogger +logger = getLogger(__name__ ) + class MrnaAssayTissueData(object): def __init__(self, gene_symbols=None): @@ -54,7 +57,7 @@ class MrnaAssayTissueData(object): as x inner join TissueProbeSetXRef as t on t.Symbol = x.Symbol and t.Mean = x.maxmean; '''.format(in_clause) - + logger.sql(query) results = g.db.execute(query).fetchall() lower_symbols = [] @@ -99,6 +102,7 @@ class MrnaAssayTissueData(object): TissueProbeSetXRef.DataId = TissueProbeSetData.Id""".format(db_tools.create_in_clause(id_list)) print("TISSUE QUERY:", query) + logger.sql(query) results = g.db.execute(query).fetchall() for result in results: @@ -157,4 +161,3 @@ class MrnaAssayTissueData(object): # # if len(tissue_data.gene_symbols): # return get_symbol_values_pairs(tissue_data) - |