diff options
Diffstat (limited to 'wqflask/base/data_set.py')
-rwxr-xr-x | wqflask/base/data_set.py | 47 |
1 files changed, 47 insertions, 0 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index 1cd57b4b..40c38fe8 100755 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -292,6 +292,7 @@ class DatasetGroup(object): self.incparentsf1 = False self.allsamples = None + self._datasets = None def get_specified_markers(self, markers = []): self.markers = HumanMarkers(self.name, markers) @@ -305,6 +306,52 @@ class DatasetGroup(object): self.markers = marker_class(self.name) + def datasets(self): + key = "group_dataset_menu:v1:" + self.name + print("key is:", key) + with Bench("Loading cache"): + result = Redis.get(key) + if result: + self._datasets = pickle.loads(result) + return self._datasets + + dataset_menu = [] + print("[tape4] webqtlConfig.PUBLICTHRESH:", webqtlConfig.PUBLICTHRESH) + print("[tape4] type webqtlConfig.PUBLICTHRESH:", type(webqtlConfig.PUBLICTHRESH)) + results = g.db.execute("""SELECT PublishFreeze.FullName,PublishFreeze.Name FROM + PublishFreeze,InbredSet WHERE PublishFreeze.InbredSetId = InbredSet.Id + and InbredSet.Name = %s and PublishFreeze.public > %s""", + (self.name, webqtlConfig.PUBLICTHRESH)) + for item in results.fetchall(): + dataset_menu.append(dict(tissue=None, + datasets=[item])) + + results = g.db.execute("""SELECT GenoFreeze.FullName,GenoFreeze.Name FROM GenoFreeze, + InbredSet WHERE GenoFreeze.InbredSetId = InbredSet.Id and InbredSet.Name = + %s and GenoFreeze.public > %s""", + (self.name, webqtlConfig.PUBLICTHRESH)) + for item in results.fetchall(): + dataset_menu.append(dict(tissue=None, + datasets=[item])) + + #03/09/2009: Xiaodong changed the SQL query to order by Name as requested by Rob. + tissues = g.db.execute("SELECT Id, Name FROM Tissue order by Name") + for item in tissues.fetchall(): + tissue_id, tissue_name = item + data_sets = g.db.execute('''SELECT ProbeSetFreeze.FullName,ProbeSetFreeze.Name FROM ProbeSetFreeze, ProbeFreeze, + InbredSet WHERE ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and ProbeFreeze.TissueId = %s and + ProbeSetFreeze.public > %s and ProbeFreeze.InbredSetId = InbredSet.Id and InbredSet.Name like %s + order by ProbeSetFreeze.CreateTime desc, ProbeSetFreeze.AvgId ''', + (tissue_id, webqtlConfig.PUBLICTHRESH, "%" + self.name + "%")) + dataset_sub_menu = [item for item in data_sets.fetchall() if item] + if dataset_sub_menu: + dataset_menu.append(dict(tissue=tissue_name, + datasets=dataset_sub_menu)) + + Redis.set(key, pickle.dumps(dataset_menu, pickle.HIGHEST_PROTOCOL)) + Redis.expire(key, 60*5) + self._datasets = dataset_menu + return self._datasets def get_f1_parent_strains(self): try: |