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-rwxr-xr-xwqflask/base/data_set.py10
1 files changed, 9 insertions, 1 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index a2b13748..843862aa 100755
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -164,6 +164,7 @@ class Markers(object):
marker['chr'] = int(marker['chr'])
else:
marker['chr'] = 19
+ print("Mb:", marker['Mb'])
marker['Mb'] = float(marker['Mb'])
self.markers = markers
@@ -670,6 +671,7 @@ class PhenotypeDataSet(DataSet):
def get_trait_info(self, trait_list, species = ''):
for this_trait in trait_list:
+
if not this_trait.haveinfo:
this_trait.retrieve_info(get_qtl_info=True)
@@ -679,6 +681,7 @@ class PhenotypeDataSet(DataSet):
#phenotype traits, then display the pre-publication description instead
#of the post-publication description
if this_trait.confidential:
+ this_trait.description_display = ""
continue # for now
if not webqtlUtil.hasAccessToConfidentialPhenotypeTrait(
@@ -688,7 +691,12 @@ class PhenotypeDataSet(DataSet):
description = this_trait.pre_publication_description
- this_trait.description_display = description.strip()
+ if len(description) > 0:
+ this_trait.description_display = description.strip()
+ else:
+ this_trait.description_display = ""
+
+ print("this_trait.description_display is:", this_trait.description_display)
if not this_trait.year.isdigit():
this_trait.pubmed_text = "N/A"