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-rwxr-xr-xwqflask/base/data_set.py2
1 files changed, 2 insertions, 0 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index d4e97370..0b3b5248 100755
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -77,9 +77,11 @@ class Markers(object):
def add_pvalues(self, p_values):
for marker, p_value in itertools.izip(self.markers, p_values):
marker['p_value'] = p_value
+ marker['lod_score'] = -math.log10(marker['p_value'])
#Using -log(p) for the LRS; need to ask Rob how he wants to get LRS from p-values
marker['lrs_value'] = -math.log10(marker['p_value']) * 4.61
+
class DatasetGroup(object):
"""
Each group has multiple datasets; each species has multiple groups.