diff options
Diffstat (limited to 'wqflask/base/data_set.py')
| -rw-r--r-- | wqflask/base/data_set.py | 11 |
1 files changed, 8 insertions, 3 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index 7fe9a8ac..abfdd277 100644 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -307,9 +307,11 @@ class DatasetGroup(object): mapping_id = g.db.execute("select MappingMethodId from InbredSet where Name= '%s'" % self.name).fetchone()[0] if mapping_id == "1": - mapping_names = ["QTLReaper", "R/qtl"] + mapping_names = ["GEMMA", "QTLReaper", "R/qtl"] elif mapping_id == "2": - mapping_names = ["GEMMA"] + mapping_names = [] + elif mapping_id == "3": + mapping_names = ["R/qtl"] elif mapping_id == "4": mapping_names = ["GEMMA", "PLINK"] else: @@ -392,7 +394,10 @@ class DatasetGroup(object): # reaper barfs on unicode filenames, so here we ensure it's a string if self.genofile: - full_filename = str(locate(self.genofile, 'genotype')) + if "RData" in self.genofile: #ZS: This is a temporary fix; I need to change the way the JSON files that point to multiple genotype files are structured to point to other file types like RData + full_filename = str(locate(self.genofile.split(".")[0] + ".geno", 'genotype')) + else: + full_filename = str(locate(self.genofile, 'genotype')) else: full_filename = str(locate(self.name + '.geno', 'genotype')) |