diff options
Diffstat (limited to 'wqflask/base/data_set.py')
| -rwxr-xr-x | wqflask/base/data_set.py | 25 |
1 files changed, 8 insertions, 17 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index 89bbf03d..b2836480 100755 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -625,33 +625,24 @@ class MrnaAssayDataSet(DataSet): return trait_data def get_trait_data(self): - import pdb - pdb.set_trace() - #samplelist = [] - #samplelist += self.group.samplelist - #samplelist += self.group.parlist - #samplelist += self.group.f1list - #self.samplelist = samplelist - self.samplelist = self.group.samplelist + self.group.parlist + self.group.f1list - sample_ids = [] - where_clause = "" - for sample in self.samplelist: - if len(where_clause): - where_clause += " or " - where_clause += """'{}'""".format(*mescape(sample)) + #for sample in self.samplelist: + # if len(where_clause): + # where_clause += " or " + # where_clause += "Strain.Name = '{}'".format(*mescape(sample)) query = """ SELECT Strain.Id, Strain.Name FROM Strain, Species - WHERE Strain.Name = '{}' + WHERE ({}) and Strain.SpeciesId=Species.Id and Species.name = '{}' - """.format(*mescape(where_clause, self.group.species)) + """.format(where_clause, *mescape(self.group.species)) + print("raspberry query: ", query) result = g.db.execute(query).fetchall() - print("[blueberry] result is:", pf(result)) + print("[blackberry] result is:", pf(result)) #sample_ids.append('%d' % this_id) # MySQL limits the number of tables that can be used in a join to 61, |