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-rwxr-xr-xwqflask/base/data_set.py15
1 files changed, 14 insertions, 1 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index 5d21c901..16f9da5d 100755
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -1078,7 +1078,20 @@ class MrnaAssayDataSet(DataSet):
def retrieve_gene_symbols(self):
query = """
- select ProbeSet.Name, ProbeSet.Symbol
+ select ProbeSet.Name, ProbeSet.Symbol, ProbeSet.GeneId
+ from ProbeSet,ProbeSetXRef
+ where ProbeSetXRef.ProbeSetFreezeId = %s and
+ ProbeSetXRef.ProbeSetId=ProbeSet.Id;
+ """ % (self.id)
+ results = g.db.execute(query).fetchall()
+ symbol_dict = {}
+ for item in results:
+ symbol_dict[item[0]] = item[1]
+ return symbol_dict
+
+ def retrieve_gene_ids(self):
+ query = """
+ select ProbeSet.Name, ProbeSet.GeneId
from ProbeSet,ProbeSetXRef
where ProbeSetXRef.ProbeSetFreezeId = %s and
ProbeSetXRef.ProbeSetId=ProbeSet.Id;