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-rwxr-xr-xwqflask/base/data_set.py30
1 files changed, 15 insertions, 15 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index 0c7676c4..0903bf16 100755
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -90,8 +90,8 @@ class Markers(object):
self.markers = json.load(json_data_fh)
def add_pvalues(self, p_values):
- print("length of self.markers:", len(self.markers))
- print("length of p_values:", len(p_values))
+ #print("length of self.markers:", len(self.markers))
+ #print("length of p_values:", len(p_values))
# THIS IS only needed for the case when we are limiting the number of p-values calculated
if len(self.markers) < len(p_values):
@@ -161,7 +161,7 @@ class DatasetGroup(object):
self.f1list = None
self.parlist = None
self.get_f1_parent_strains()
- print("parents/f1s: {}:{}".format(self.parlist, self.f1list))
+ #print("parents/f1s: {}:{}".format(self.parlist, self.f1list))
self.species = webqtlDatabaseFunction.retrieve_species(self.name)
@@ -170,7 +170,7 @@ class DatasetGroup(object):
def get_markers(self):
- print("self.species is:", self.species)
+ #print("self.species is:", self.species)
if self.species == "human":
marker_class = HumanMarkers
else:
@@ -293,14 +293,14 @@ class DataSet(object):
self.name,
self.name,
self.name))
- print("query_args are:", query_args)
+ #print("query_args are:", query_args)
- print("""
- SELECT Id, Name, FullName, ShortName
- FROM %s
- WHERE public > %s AND
- (Name = '%s' OR FullName = '%s' OR ShortName = '%s')
- """ % (query_args))
+ #print("""
+ # SELECT Id, Name, FullName, ShortName
+ # FROM %s
+ # WHERE public > %s AND
+ # (Name = '%s' OR FullName = '%s' OR ShortName = '%s')
+ # """ % (query_args))
self.id, self.name, self.fullname, self.shortname = g.db.execute("""
SELECT Id, Name, FullName, ShortName
@@ -624,12 +624,12 @@ class MrnaAssayDataSet(DataSet):
and ProbeSetFreezeId = {}
""".format(escape(str(self.id)))
results = g.db.execute(query).fetchall()
- print("After get_trait_list query")
+ #print("After get_trait_list query")
trait_data = {}
for trait in results:
print("Retrieving sample_data for ", trait[0])
trait_data[trait[0]] = self.retrieve_sample_data(trait[0])
- print("After retrieve_sample_data")
+ #print("After retrieve_sample_data")
return trait_data
def get_trait_data(self):
@@ -763,7 +763,7 @@ class MrnaAssayDataSet(DataSet):
""" % (escape(str(this_trait.dataset.id)),
escape(this_trait.name)))
- print("query is:", pf(query))
+ #print("query is:", pf(query))
result = g.db.execute(query).fetchone()
@@ -926,7 +926,7 @@ class TempDataSet(DataSet):
def geno_mrna_confidentiality(ob):
dataset_table = ob.type + "Freeze"
- print("dataset_table [%s]: %s" % (type(dataset_table), dataset_table))
+ #print("dataset_table [%s]: %s" % (type(dataset_table), dataset_table))
query = '''SELECT Id, Name, FullName, confidentiality,
AuthorisedUsers FROM %s WHERE Name = %%s''' % (dataset_table)