diff options
Diffstat (limited to 'wqflask/base/data_set.py')
| -rwxr-xr-x | wqflask/base/data_set.py | 32 |
1 files changed, 15 insertions, 17 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index 68a2a185..aaea7ec3 100755 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -280,7 +280,7 @@ class DatasetGroup(object): """ def __init__(self, dataset): """This sets self.group and self.group_id""" - print("DATASET NAME2:", dataset.name) + #print("DATASET NAME2:", dataset.name) self.name, self.id = g.db.execute(dataset.query_for_group).fetchone() if self.name == 'BXD300': self.name = "BXD" @@ -366,7 +366,7 @@ class DatasetGroup(object): break if tissue_already_exists: - print("dataset_menu:", dataset_menu[i]['datasets']) + #print("dataset_menu:", dataset_menu[i]['datasets']) dataset_menu[i]['datasets'].append((dataset, dataset_short)) else: dataset_menu.append(dict(tissue=tissue_name, @@ -392,18 +392,18 @@ class DatasetGroup(object): def get_samplelist(self): key = "samplelist:v2:" + self.name - print("key is:", key) - with Bench("Loading cache"): - result = Redis.get(key) + #print("key is:", key) + #with Bench("Loading cache"): + result = Redis.get(key) if result: - print("Sample List Cache hit!!!") - print("Before unjsonifying {}: {}".format(type(result), result)) + #print("Sample List Cache hit!!!") + #print("Before unjsonifying {}: {}".format(type(result), result)) self.samplelist = json.loads(result) - print(" type: ", type(self.samplelist)) - print(" self.samplelist: ", self.samplelist) + #print(" type: ", type(self.samplelist)) + #print(" self.samplelist: ", self.samplelist) else: - print("Cache not hit") + #print("Cache not hit") from utility.tools import plink_command PLINK_PATH,PLINK_COMMAND = plink_command() @@ -417,7 +417,7 @@ class DatasetGroup(object): self.samplelist = get_group_samplelists.get_samplelist("geno", geno_file_path) else: self.samplelist = None - print("after get_samplelist") + #print("after get_samplelist") Redis.set(key, json.dumps(self.samplelist)) Redis.expire(key, 60*5) @@ -442,9 +442,9 @@ class DatasetGroup(object): # reaper barfs on unicode filenames, so here we ensure it's a string full_filename = str(os.path.join(webqtlConfig.GENODIR, self.name + '.geno')) if os.path.isfile(full_filename): - print("Reading file: ", full_filename) + #print("Reading file: ", full_filename) genotype_1.read(full_filename) - print("File read") + #print("File read") else: try: full_filename = str(os.path.join(webqtlConfig.TMPDIR, self.name + '.geno')) @@ -521,8 +521,6 @@ class DataSet(object): self.group.get_samplelist() self.species = species.TheSpecies(self) - print("TESTING!!!") - def get_desc(self): """Gets overridden later, at least for Temp...used by trait's get_given_name""" @@ -700,7 +698,7 @@ class PhenotypeDataSet(DataSet): def setup(self): - print("IS A PHENOTYPEDATASET") + #print("IS A PHENOTYPEDATASET") # Fields in the database table self.search_fields = ['Phenotype.Post_publication_description', @@ -1032,7 +1030,7 @@ class MrnaAssayDataSet(DataSet): #print("After get_trait_list query") trait_data = {} for trait in results: - print("Retrieving sample_data for ", trait[0]) + #print("Retrieving sample_data for ", trait[0]) trait_data[trait[0]] = self.retrieve_sample_data(trait[0]) #print("After retrieve_sample_data") return trait_data |