diff options
Diffstat (limited to 'wqflask/base/data_set.py')
| -rw-r--r-- | wqflask/base/data_set.py | 19 |
1 files changed, 9 insertions, 10 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index f58367ca..6e07e383 100644 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -26,6 +26,7 @@ import collections import codecs import json +import requests import gzip import cPickle as pickle import itertools @@ -63,7 +64,7 @@ logger = getLogger(__name__ ) # Each subclass will add to this DS_NAME_MAP = {} -def create_dataset(dataset_name, dataset_type = None, get_samplelist = True, group_name = None): +def create_dataset(dataset_name, rebuild=True, dataset_type = None, get_samplelist = True, group_name = None): if not dataset_type: dataset_type = Dataset_Getter(dataset_name) logger.debug("dataset_type", dataset_type) @@ -77,7 +78,7 @@ def create_dataset(dataset_name, dataset_type = None, get_samplelist = True, gro class Dataset_Types(object): - def __init__(self): + def __init__(self, rebuild=False): """Create a dictionary of samples where the value is set to Geno, Publish or ProbeSet. E.g. @@ -93,8 +94,10 @@ Publish or ProbeSet. E.g. """ self.datasets = {} - if USE_GN_SERVER: - data = gen_menu.gen_dropdown_json() + if rebuild: #ZS: May make this the only option + data = json.loads(requests.get("http://gn2.genenetwork.org/api/v_pre1/gen_dropdown").content) + logger.debug("THE DATA:", data) + #data = gen_menu.gen_dropdown_json() else: file_name = "wqflask/static/new/javascript/dataset_menu_structure.json" with open(file_name, 'r') as fh: @@ -119,12 +122,8 @@ Publish or ProbeSet. E.g. def __call__(self, name): return self.datasets[name] -def rebuild_dataset_ob(): - Dataset_Getter = Dataset_Types() - return Dataset_Getter - # Do the intensive work at startup one time only -Dataset_Getter = rebuild_dataset_ob() +Dataset_Getter = Dataset_Types() def create_datasets_list(): if USE_REDIS: @@ -705,7 +704,7 @@ class PhenotypeDataSet(DataSet): 'PublishXRef.Id'] # Figure out what display_fields is - self.display_fields = ['name', + self.display_fields = ['name', 'group_code', 'pubmed_id', 'pre_publication_description', 'post_publication_description', |