diff options
Diffstat (limited to 'web')
| -rwxr-xr-x | web/webqtl/pubmedsearch/PubmedSearch.py | 58 | ||||
| -rwxr-xr-x | web/webqtl/pubmedsearch/PubmedSearchRe.py | 57 | ||||
| -rwxr-xr-x | web/webqtl/pubmedsearch/__init__.py | 0 | ||||
| -rwxr-xr-x | web/webqtl/search/pubmedsearch.py | 12 |
4 files changed, 0 insertions, 127 deletions
diff --git a/web/webqtl/pubmedsearch/PubmedSearch.py b/web/webqtl/pubmedsearch/PubmedSearch.py deleted file mode 100755 index 8e7b0725..00000000 --- a/web/webqtl/pubmedsearch/PubmedSearch.py +++ /dev/null @@ -1,58 +0,0 @@ -# Copyright (C) University of Tennessee Health Science Center, Memphis, TN. -# -# This program is free software: you can redistribute it and/or modify it -# under the terms of the GNU Affero General Public License -# as published by the Free Software Foundation, either version 3 of the -# License, or (at your option) any later version. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. -# See the GNU Affero General Public License for more details. -# -# This program is available from Source Forge: at GeneNetwork Project -# (sourceforge.net/projects/genenetwork/). -# -# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010) -# at rwilliams@uthsc.edu and xzhou15@uthsc.edu -# -# -# -# This module is used by GeneNetwork project (www.genenetwork.org) -# -# Created by GeneNetwork Core Team 2010/08/10 -# -# Last updated by GeneNetwork Core Team 2010/10/20 - -#geneWikiPage.py -# -#This one's pretty self-evident from the title. If you use the GeneWiki module, this is what's behind it. -KA - -# Xiaodong changed the dependancy structure - -from htmlgen import HTMLgen2 as HT -import os -import string - -from base.templatePage import templatePage -from base import webqtlConfig -from utility import webqtlUtil - -######################################### -######################################### - -class PubmedSearch(templatePage): - - def __init__(self, fd): - templatePage.__init__(self, fd) - self.content_type = 'text/html' - Heading = HT.Paragraph("pubmed search", Class="title") - Intro = HT.Blockquote("This is a description.") - form = HT.Form(cgi=os.path.join(webqtlConfig.CGIDIR, webqtlConfig.SCRIPTFILE), name='pubmedsearch', submit=HT.Input(type='hidden')) - form.append(HT.Input(type="text", size = 45, maxlength=100, name="symbol")) - form.append(HT.Input(type="hidden", name="FormID", value="pubmedsearchre")) - form.append(HT.Input(type="submit", name="submit", value="submit", Class="button")) - TD_LR = HT.TD(height=200,width="100%",bgColor='#eeeeee',valign="top") - TD_LR.append(Heading, Intro, HT.Center(form)) - self.dict['body'] = str(TD_LR) - self.dict['title'] = "Pubmed Search"
\ No newline at end of file diff --git a/web/webqtl/pubmedsearch/PubmedSearchRe.py b/web/webqtl/pubmedsearch/PubmedSearchRe.py deleted file mode 100755 index fcbfd941..00000000 --- a/web/webqtl/pubmedsearch/PubmedSearchRe.py +++ /dev/null @@ -1,57 +0,0 @@ -# Copyright (C) University of Tennessee Health Science Center, Memphis, TN. -# -# This program is free software: you can redistribute it and/or modify it -# under the terms of the GNU Affero General Public License -# as published by the Free Software Foundation, either version 3 of the -# License, or (at your option) any later version. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. -# See the GNU Affero General Public License for more details. -# -# This program is available from Source Forge: at GeneNetwork Project -# (sourceforge.net/projects/genenetwork/). -# -# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010) -# at rwilliams@uthsc.edu and xzhou15@uthsc.edu -# -# -# -# This module is used by GeneNetwork project (www.genenetwork.org) -# -# Created by GeneNetwork Core Team 2010/08/10 -# -# Last updated by GeneNetwork Core Team 2010/10/20 - -#geneWikiPage.py -# -#This one's pretty self-evident from the title. If you use the GeneWiki module, this is what's behind it. -KA - -# Xiaodong changed the dependancy structure - -from htmlgen import HTMLgen2 as HT -import os -import string - -from base.templatePage import templatePage -from base import webqtlConfig -from utility import webqtlUtil - -######################################### -######################################### - -class PubmedSearchRe(templatePage): - - def __init__(self, fd): - templatePage.__init__(self, fd) - self.content_type = 'text/html' - Heading = HT.Paragraph("pubmed search", Class="title") - Intro = HT.Blockquote("This is a description.") - - table = HT.TableLite(border=0, cellpadding=0, cellspacing=0) - - TD_LR = HT.TD(height=200,width="100%",bgColor='#eeeeee',valign="top") - TD_LR.append(Heading, Intro, HT.Center(form)) - self.dict['body'] = str(TD_LR) - self.dict['title'] = "Pubmed Search"
\ No newline at end of file diff --git a/web/webqtl/pubmedsearch/__init__.py b/web/webqtl/pubmedsearch/__init__.py deleted file mode 100755 index e69de29b..00000000 --- a/web/webqtl/pubmedsearch/__init__.py +++ /dev/null diff --git a/web/webqtl/search/pubmedsearch.py b/web/webqtl/search/pubmedsearch.py deleted file mode 100755 index d0d18ff5..00000000 --- a/web/webqtl/search/pubmedsearch.py +++ /dev/null @@ -1,12 +0,0 @@ -import sys -import os -import MySQLdb -import time - -db='db_webqtl_leiyan' -author="megan memphis" - -con = MySQLdb.Connect(db=db,user='webqtlupd',passwd='webqtl', host="localhost") -cursor = con.cursor() -cursor.execute('select PhenotypeId, Locus, DataId, Phenotype.Post_publication_description from PublishXRef, Phenotype where PublishXRef.PhenotypeId = Phenotype.Id and InbredSetId=%s'%InbredSetId) -PublishXRefInfos = cursor.fetchall() |