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Diffstat (limited to 'web/webqtl/schema/ShowSchemaPage.py')
| -rwxr-xr-x | web/webqtl/schema/ShowSchemaPage.py | 194 |
1 files changed, 0 insertions, 194 deletions
diff --git a/web/webqtl/schema/ShowSchemaPage.py b/web/webqtl/schema/ShowSchemaPage.py deleted file mode 100755 index e9ced5a1..00000000 --- a/web/webqtl/schema/ShowSchemaPage.py +++ /dev/null @@ -1,194 +0,0 @@ -# Copyright (C) University of Tennessee Health Science Center, Memphis, TN. -# -# This program is free software: you can redistribute it and/or modify it -# under the terms of the GNU Affero General Public License -# as published by the Free Software Foundation, either version 3 of the -# License, or (at your option) any later version. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. -# See the GNU Affero General Public License for more details. -# -# This program is available from Source Forge: at GeneNetwork Project -# (sourceforge.net/projects/genenetwork/). -# -# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010) -# at rwilliams@uthsc.edu and xzhou15@uthsc.edu -# -# -# -# This module is used by GeneNetwork project (www.genenetwork.org) -# -# Created by GeneNetwork Core Team 2010/08/10 -# -# Last updated by GeneNetwork Core Team 2010/10/20 - -import sys - -from htmlgen import HTMLgen2 as HT - -from base.templatePage import templatePage -from base import webqtlConfig -from utility import webqtlUtil - - - -################################################### -#Description: show the schema of webqtl's database# -#Author: Hongqiang Li # -#Version: 1.0 # -################################################### - -class ShowSchemaPage(templatePage): - def __init__(self,fd): - cookies = fd.cookies - sys.stderr = sys.stdout - templatePage.__init__(self, fd) - body = HT.SimpleDocument() - - ############################################################################### - #get user's privilege from cookie, if the user doesn't have enough privilege, # - #he won't see the update comment icon # - ############################################################################### - ShowUpdateIcon = False - - if not self.openMysql(): - return - - Cursor_WebQtl = Cursor_Comment = self.cursor - - if webqtlConfig.USERDICT[self.privilege] >= webqtlConfig.USERDICT['user']: - ShowUpdateIcon = True - - ################## - #show description# - ################## - body.append('<BR>') - body.append('<H1>') - body.append('Description of Schema') - if ShowUpdateIcon: - #{ - # Modified by Hongqiang Li - # Image_Update = HT.Image('http://web2qtl.utmem.edu/images/modify.gif') - Image_Update = HT.Image('/images/modify.gif') - # - Href_Update = HT.Href(webqtlConfig.CGIDIR+'main.py?FormID=schemaShowComment&TableName=Description_of_Schema', Image_Update) - body.append(Href_Update) - #} - body.append('</H1>') - - Cursor_WebQtl.execute('select Comment from TableComments where TableName=\'Description_of_Schema\'') - Comment = Cursor_WebQtl.fetchone(); - if Comment: - if str(Comment[0])!='None': - body.append(Comment[0]) - - body.append('<HR WIDTH=100%>') - body.append('<H2>Tables</H2>') - - ################## - #show table names# - ################## - Cursor_WebQtl.execute('show tables') - Tables=Cursor_WebQtl.fetchall() - BlockedTables = ['User', 'TableComments', 'TableFieldAnnotation', 'ProbeSetXRef_TEMP', 'DBList', 'DBType', 'HumanGene', 'LCorr', 'Temp', 'TempData'] - for i in range(0, len(Tables)): - #{ - TableName = Tables[i][0] - if TableName in BlockedTables: #skip the table who is blocked - continue - - HrefTable_Schema = HT.Href(webqtlConfig.CGIDIR+'main.py?FormID=schemaShowPage#'+TableName, TableName) - body.append(str(HrefTable_Schema)+'<BR>') - #} - body.append('<hr width=100%>') - - for i in range(0, len(Tables)): - #{ - TableName = Tables[i][0] - if TableName in BlockedTables: #skip the table who is blocked - continue - - ##################### - #get table's comment# - ##################### - SqlCmd = 'select Comment from TableComments where TableName=\'%s\'' %(TableName) - Cursor_WebQtl.execute(SqlCmd) - Comment = Cursor_WebQtl.fetchall() - - #################################### - #get the content of a table's schma# - #################################### - Cursor_WebQtl.execute('desc %s' %(TableName)) - TableDesc = Cursor_WebQtl.fetchall(); - - HtmlTR_Schema = [] - for row in range(0, len(TableDesc)): - #{ - HtmlTD_Schema = [] - for col in range(0, len(TableDesc[row])): - if str(TableDesc[row][col])=='None' or str(TableDesc[row][col])=='': #just means I don't want show 'None' *_^ - HtmlTD_Schema.append(' ') - else: - HtmlTD_Schema.append(TableDesc[row][col]) - - ############################## - #get table fileds' annotation# - ############################## - TableField = TableName+'.'+TableDesc[row][0] - Cursor_WebQtl.execute('select Annotation, Foreign_Key from TableFieldAnnotation where TableField=%s', (TableField)) - Annotation = Cursor_WebQtl.fetchone(); - if Annotation: - #{ - if str(Annotation[1])=='None' or str(Annotation[1])=='': - HtmlTD_Schema.append(' ') - else: - HtmlTD_Schema.append(Annotation[1]) - if str(Annotation[0])=='None' or str(Annotation[0])=='': - HtmlTD_Schema.append(' ') - else: - HtmlTD_Schema.append(Annotation[0]) - #} - else: - #{ - HtmlTD_Schema.append(' ') - HtmlTD_Schema.append(' ') - #} - - HtmlTR_Schema.append(HtmlTD_Schema) - #} - - ############################### - #Html code of a table's schema# - ############################### - body.append(HT.NAME(TableName, TableName)) - if ShowUpdateIcon: - #{ - # Modified by Hongqiang Li - #Image_Update = HT.Image('http://web2qtl.utmem.edu/images/modify.gif') - Image_Update = HT.Image('/images/modify.gif') - # - Href_Update = HT.Href(webqtlConfig.CGIDIR+'main.py?FormID=schemaShowComment&TableName=%s' %(TableName), Image_Update) - body.append(Href_Update) - #} - body.append('<BR><BR>') - - body.append('<B>Comment:</B><BR>') - #body.append("<I>") - if Comment: - if str(Comment[0][0])!='None': - for content in Comment[0][0].split('\n'): - body.append(content) - body.append('<BR>') - #body.append("</I>") - - HtmlTable_Schema = HT.Table(width='0%', heading=['Field', 'Type', 'Null', 'Key', 'Default', 'Extra', 'Foreign_Key', 'Annotation'], body = HtmlTR_Schema) - body.append(HtmlTable_Schema) - body.append('<hr width=100%>') - #} - - self.dict['body'] = body - - - |