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Diffstat (limited to 'web/webqtl/networkGraph/networkGraphPageBody.py')
| -rw-r--r-- | web/webqtl/networkGraph/networkGraphPageBody.py | 697 |
1 files changed, 697 insertions, 0 deletions
diff --git a/web/webqtl/networkGraph/networkGraphPageBody.py b/web/webqtl/networkGraph/networkGraphPageBody.py new file mode 100644 index 00000000..22b49ccd --- /dev/null +++ b/web/webqtl/networkGraph/networkGraphPageBody.py @@ -0,0 +1,697 @@ +# Copyright (C) University of Tennessee Health Science Center, Memphis, TN. +# +# This program is free software: you can redistribute it and/or modify it +# under the terms of the GNU Affero General Public License +# as published by the Free Software Foundation, either version 3 of the +# License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. +# See the GNU Affero General Public License for more details. +# +# This program is available from Source Forge: at GeneNetwork Project +# (sourceforge.net/projects/genenetwork/). +# +# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010) +# at rwilliams@uthsc.edu and xzhou15@uthsc.edu +# +# +# +# This module is used by GeneNetwork project (www.genenetwork.org) +# +# Created by GeneNetwork Core Team 2010/08/10 +# +# Last updated by GeneNetwork Core Team 2010/10/20 + +from base.templatePage import templatePage +import networkGraphUtils +from base import webqtlConfig + + +# our output representation is fairly complicated +# because we use an iframe to represent the image and the image has +# an associated image map, our output is actually three files +# 1) a networkGraphPage instance -- the URL we pass to the user +# 2) a GraphPage with the image map and the graph -- this page has to be +# there to pass the imagemap data to the browser +# 3) a PNG graph file itself + +class networkGraphPageBody(templatePage): + """ + Using the templatePage class, we build an HTML shell for the graph + that displays the parameters used to generate it and allows the + user to redraw the graph with different parameters. + + The way templatePage works, we build the page in pieces in the __init__ + method and later on use the inherited write method to render the page. + """ + + def __init__(self, fd, matrix, traits, imageHtmlName, imageName, pdfName, nodes, + edges, rawEdges, totalTime, p, graphcode, graphName, optimalNode): + + templatePage.__init__(self, fd) + + if p["printIslands"] == 0: + island = "Only nodes with edges" + else: + island = "All nodes" + + body = """ <td><P class='title'>Network Graph</P> + <Blockquote><p>The %s nodes in the + graph below show the selected traits. %s are displayed. The + %s edges between the nodes, filtered from the %s total edges and + drawn as %s, show <b>%s</b> correlation + coefficients greater than %s or less than -%s. The graph\'s + canvas is %s by %s cm, and the node + labels are drawn with a %s point font, and the edge + labels are drawn with a %s point font. Right-click or control-click + on the graph to save it to disk for further manipulation. See + below for the trait key, and graph options.</p> + """ % (nodes, island, edges, rawEdges, + p["splineName"], p["correlationName"], + p["kValue"], + p["kValue"], + p["width"], + p["height"], + p["nfontsize"], + p["cfontsize"]) + + #Generate a list of symbols for the central node selection drop-down menu + + symbolList = networkGraphUtils.generateSymbolList(traits) + + #Some of these hidden variables (CellID, CellID2, ProbesetID2, etc) exist + #to be used by the javascript functions called when a user clicks on an edge or node + + formParams = ''' + + <form name="showDatabase" action="%s%s" METHOD="POST" enctype="multipart/form-data"> + + <input type="hidden" name="filename" value="%s" /> + <input type="hidden" name="exportFilename" value="%s" /> + <input type="hidden" name="progress" value="1" /> + <input type="hidden" name="database" value="_" /> + <input type="hidden" name="database2" value="_" /> + <input type="hidden" name="ProbeSetID" value="_" /> + <input type="hidden" name="ProbeSetID2" value="_" /> + <input type="hidden" name="CellID" value="_" /> + <input type="hidden" name="CellID2" value="_" /> + <input type="hidden" name="tune" value="no" /> + <input type="hidden" name="ShowLine" value="ON"> + <input type="hidden" name="ShowStrains" value="ON"> + <input type="hidden" name="FormID" value="showDatabase" /> + <input type="hidden" name="RISet" value="%s" /> + <input type="hidden" name="incparentsf1" value="ON" /> + <input type="hidden" name="session" value="%s" /> + <input type="hidden" name="searchResult" id="searchResult" value="%s" /> + <input type="hidden" name="symbolList" id="symbolList" value="%s" /> + <input type="hidden" name="optimalNode" id="optimalNode" value="%s" /> + <input type="hidden" name="rankOrder" id="rankOrder" value="_" /> + <input type="hidden" name="X_geneID" id="X_geneID" value="_" /> + <input type="hidden" name="Y_geneID" id="Y_geneID" value="_" /> + <input type="hidden" name="X_geneSymbol" id="X_geneSymbol" value="_" /> + <input type="hidden" name="Y_geneSymbol" id="Y_geneSymbol" value="_" /> + <input type="hidden" name="TissueProbeSetFreezeId" id="TissueProbeSetFreezeId" value="1" /> + ''' % (webqtlConfig.CGIDIR, + webqtlConfig.SCRIPTFILE, + p["filename"], + graphName, + p["riset"], + p["session"], + p["searchResult"], + symbolList, + optimalNode) + + body += formParams + + #Adds the html generated by graphviz that displays the graph itself + body += graphcode + + #Initializes all form values + + selected = ["","","",""] + selected[p["whichValue"]] = "CHECKED" + + selected3 = ["",""] + if p["splines"] == "yes": + selected3[0] = "CHECKED" + else: + selected3[1] = "CHECKED" + + selected5 = ["",""] + if p["nodeshape"] == "yes": + selected5[0] = "CHECKED" + else: + selected5[1] = "CHECKED" + + selected7 = ["",""] + if p["nodelabel"] == "yes": + selected7[0] = "CHECKED" + else: + selected7[1] = "CHECKED" + + selected6 = ["",""] + if p["dispcorr"] == "yes": + selected6[0] = "CHECKED" + else: + selected6[1] = "CHECKED" + + selected4 = ["", ""] + selected4[p["printIslands"]] = "CHECKED" + + selectedExportFormat = ["",""] + if p["exportFormat"] == "xgmml": + selectedExportFormat[0] = "selected='selected'" + elif p["exportFormat"] == "plain": + selectedExportFormat[1] = "selected='selected'" + + selectedTraitType = ["",""] + if p["traitType"] == "symbol": + selectedTraitType[0] = "selected='selected'" + elif p["traitType"] == "name": + selectedTraitType[1] = "selected='selected'" + + selectedgType = ["","","","",""] + if p["gType"] == "none": + selectedgType[0] = "selected='selected'" + elif p["gType"] == "neato": + selectedgType[1] = "selected='selected'" + elif p["gType"] == "fdp": + selectedgType[2] = "selected='selected'" + elif p["gType"] == "circular": + selectedgType[3] = "selected='selected'" + elif p["gType"] == "radial": + selectedgType[4] = "selected='selected'" + + + selectedLock = ["",""] + if p["lock"] == "no": + selectedLock[0] = "selected='selected'" + elif p["lock"] == "yes": + selectedLock[1] = "selected='selected'" + + # line 1~6 + + selectedL1style = ["","","","",""] + if p["L1style"] == "": + selectedL1style[0] = "selected='selected'" + elif p["L1style"] == "bold": + selectedL1style[1] = "selected='selected'" + elif p["L1style"] == "dotted": + selectedL1style[2] = "selected='selected'" + elif p["L1style"] == "dashed": + selectedL1style[3] = "selected='selected'" + else: + selectedL1style[4] = "selected='selected'" + + selectedL2style = ["","","","",""] + if p["L2style"] == "": + selectedL2style[0] = "selected='selected'" + elif p["L2style"] == "bold": + selectedL2style[1] = "selected='selected'" + elif p["L2style"] == "dotted": + selectedL2style[2] = "selected='selected'" + elif p["L2style"] == "dashed": + selectedL2style[3] = "selected='selected'" + else: + selectedL2style[4] = "selected='selected'" + + selectedL3style = ["","","","",""] + if p["L3style"] == "": + selectedL3style[0] = "selected='selected'" + elif p["L3style"] == "bold": + selectedL3style[1] = "selected='selected'" + elif p["L3style"] == "dotted": + selectedL3style[2] = "selected='selected'" + elif p["L3style"] == "dashed": + selectedL3style[3] = "selected='selected'" + else: + selectedL3style[4] = "selected='selected'" + + selectedL4style = ["","","","",""] + if p["L4style"] == "": + selectedL4style[0] = "selected='selected'" + elif p["L4style"] == "bold": + selectedL4style[1] = "selected='selected'" + elif p["L4style"] == "dotted": + selectedL4style[2] = "selected='selected'" + elif p["L4style"] == "dashed": + selectedL4style[3] = "selected='selected'" + else: + selectedL4style[4] = "selected='selected'" + + selectedL5style = ["","","","",""] + if p["L5style"] == "": + selectedL5style[0] = "selected='selected'" + elif p["L5style"] == "bold": + selectedL5style[1] = "selected='selected'" + elif p["L5style"] == "dotted": + selectedL5style[2] = "selected='selected'" + elif p["L5style"] == "dashed": + selectedL5style[3] = "selected='selected'" + else: + selectedL5style[4] = "selected='selected'" + + selectedL6style = ["","","","",""] + if p["L6style"] == "": + selectedL6style[0] = "selected='selected'" + elif p["L6style"] == "bold": + selectedL6style[1] = "selected='selected'" + elif p["L6style"] == "dotted": + selectedL6style[2] = "selected='selected'" + elif p["L6style"] == "dashed": + selectedL6style[3] = "selected='selected'" + else: + selectedL6style[4] = "selected='selected'" + + nfontSelected = ["", "", ""] + if p["nfont"] == "arial": + nfontSelected[0] = "selected='selected'" + elif p["nfont"] == "verdana": + nfontSelected[1] = "selected='selected'" + elif p["nfont"] == "times": + nfontSelected[2] = "selected='selected'" + + cfontSelected = ["", "", ""] + if p["cfont"] == "arial": + cfontSelected[0] = "selected='selected'" + elif p["cfont"] == "verdana": + cfontSelected[1] = "selected='selected'" + elif p["cfont"] == "times": + cfontSelected[2] = "selected='selected'" + + #Writes the form part of the body + + body += ''' <br><br> + <TABLE cellspacing=0 Cellpadding=0> + <TR> + <TD class="doubleBorder"> + + <Table Cellpadding=3> + + <tr><td align="left"> + <dd> + + + + <input type="submit" name="mintmap" value=" Redraw " class="button" onClick="return sortSearchResults(this.form);" /> + + + <input TYPE="Button" class="button" value=" Info " onclick="javascript:window.open('/networkGraphInfo.html', '_blank');"> + </dd> + </td></tr> + + <tr><td align='center' colspan='2'><hr size='1'></td></tr> + <tr> + <tr align='left' valign='top'> + <td align='left'> + <select align='left' name='gType' id='gType' onchange='addTraitSelection();'> + <option value='none' %s>Select Graph Method</option> + <option value='neato' %s>Spring Model Layout (energy reduction)</option> + <option value='fdp' %s>Spring Model Layout (force reduction)</option> + <option value='circular' %s>Circular Layout</option> + <option value='radial' %s>Radial Layout</option> + </select> + <div align="left" id='nodeSelect'> </div> + </td> + </tr> + </tr> + + <tr><td align='center' colspan='2'><hr size='1'></td></tr> + + <tr><td align='center' colspan='2'> + + <table width='100%%'> + + <tr align='left'> + <td>Lock Graph Structure</td> + <td align='left'><select name='lock' id='lock' onChange="changeThreshold();"> + <option value='no' %s>No</option> + <option value='yes' %s>Yes</option> + </select></td> + </tr> + <tr><td align='left' colspan='2' nowrap='nowrap'> + Locking the graph structure allows the user to hold the position of<br> + all nodes and the length of all edges constant, letting him/her easily<br> + compare between different correlation types. Changing the value to "yes"<br> + requires the line threshold to be set to 0 in order to lock the structure.<br> + </td></tr> + </td> + </tr> + + + <tr><td align='center' colspan='2'><hr size='1'></td></tr> + + <tr><td align='center' colspan='2'> + + <table width='100%%'> + + <tr align='center'> + <td>Line Type 1:</td> + <td>-1</td> + <td>to</td> + <td>-0.7</td> + <td><Input type=radio name=colorS value="cL1" checked></TD> + <td bgcolor="%s" ID="cL1" width=20></td> + <td><select name='L1style'> + <option value='' %s>normal</option> + <option value='bold' %s>bold</option> + <option value='dotted' %s>dotted</option> + <option value='dashed' %s>dashed</option> + <option value='invis' %s>invisible</option> + </select></td> + </tr> + + <tr align='center'> + <td>Line Type 2:</td> + <td>-0.7</td> + <td>to</td> + <td>-0.5</td> + <td><Input type=radio name=colorS value="cL2"></TD> + <Td bgcolor="%s" ID="cL2" width=20></td> + <td><select name='L2style'> + <option value='' %s>normal</option> + <option value='bold' %s>bold</option> + <option value='dotted' %s>dotted</option> + <option value='dashed' %s>dashed</option> + <option value='invis' %s>invisible</option> + </select></td> + </tr> + + <tr align='center'> + <td>Line Type 3:</td> + <td>-0.5</td> + <td>to</td> + <td>0</td> + <td><Input type=radio name=colorS value="cL3"></TD> + <Td bgcolor="%s" ID="cL3" width=20></td> + <td><select name='L3style'> + <option value='' %s>normal</option> + <option value='bold' %s>bold</option> + <option value='dotted' %s>dotted</option> + <option value='dashed' %s>dashed</option> + <option value='invis' %s>invisible</option> + </select></td> + </tr> + + <tr align='center'> + <td>Line Type 4:</td> + <td>0</td> + <td>to</td> + <td>0.5</td> + <td><Input type=radio name=colorS value="cL4"></TD> + <Td bgcolor="%s" ID="cL4" width=20></td> + <td><select name='L4style'> + <option value='' %s>normal</option> + <option value='bold' %s>bold</option> + <option value='dotted' %s>dotted</option> + <option value='dashed' %s>dashed</option> + <option value='invis' %s>invisible</option> + </select></td> + </tr> + + <tr align='center'> + <td>Line Type 5:</td> + <td>0.5</td> + <td>to</td> + <td>0.7</td> + <td><Input type=radio name=colorS value="cL5"></TD> + <Td bgcolor="%s" ID="cL5" width=20></td> + <td><select name='L5style'> + <option value='' %s>normal</option> + <option value='bold' %s>bold</option> + <option value='dotted' %s>dotted</option> + <option value='dashed' %s>dashed</option> + <option value='invis' %s>invisible</option> + </select></td> + </tr> + + <tr align='center'> + <td>Line Type 6:</td> + <td>0.7</td> + <td>to</td> + <td>1</td> + <td><Input type=radio name=colorS value="cL6"></TD> + <Td bgcolor="%s" ID="cL6" width=20></td> + <td><select name='L6style'> + <option value='' %s>normal</option> + <option value='bold' %s>bold</option> + <option value='dotted' %s>dotted</option> + <option value='dashed' %s>dashed</option> + <option value='invis' %s>invisible</option> + </select></td> + </tr> + + </table> + </td> + </tr> + + <tr><td align='center' colspan='2' nowrap='nowrap'>To change colors, select Line Type then select Color below.</td></tr> + + <tr><td align='center' colspan='2'><hr size='1'></td></tr> + + <tr> + <TD align="right">Correlation Type:</TD> + <TD> + <table border='0' cellspacing='0' cellpadding='0' width='100%%'> + <tr> + <td><Input type="radio" name="whichValue" value="0" %s>Pearson</td> + <td><Input type="radio" name="whichValue" value="1" %s>Spearman</td> + <td rowspan=2 align="center"><input TYPE="Button" class="button" value="Info" onclick="javascript:window.open('/correlationAnnotation.html', '_blank');"></td> + </tr> + <tr> + <td><Input type="radio" name="whichValue" value="2" %s>Literature</td> + <td><Input type="radio" name="whichValue" value="3" %s>Tissue</td> + </tr> + </table> + </TD> + </TR> + + <TR> + <TD align="right" NOWRAP>Line Threshold:</TD> + <TD NOWRAP>Absolute values greater than <input size="5" name="kValue" id="kValue" value="%s"></TD> + </TR> + + <tr><td align='center' colspan='2'><hr size='1'></td></tr> + + <TR> + <TD align="right">Draw Nodes :</TD> + <TD NOWRAP> + <Input type="radio" name="printIslands" value="1" %s>all + <Input type="radio" name="printIslands" value="0" %s>connected only + </TD> + </TR> + + <TR> + <TD align="right">Node Shape:</TD> + <TD> + <Input type="radio" name="nodeshape" value="yes" %s>rectangle + <Input type="radio" name="nodeshape" value="no" %s>ellipse + </TD> + </TR> + + <TR> + <TD align="right">Node Label:</TD> + <TD> + <Input type="radio" name="nodelabel" value="yes" %s>trait name<br> + <Input type="radio" name="nodelabel" value="no" %s>gene symbol / marker name + </TD> + </TR> + + <tr> + <td align="right">Node Font:</td> + <TD> + <select name='nfont'> + <option value='Arial' %s>Arial</option> + <option value='Verdana' %s>Verdana</option> + <option value='Times' %s>Times</option> + </select> + </TD> + </TR> + + <tr> + <td align="right">Node Font Size:</td> + <TD><input size="5" name="nfontsize" value="%s"> point</TD> + </TR> + + <tr><td align='center' colspan='2'><hr size='1'></td></tr> + + <TR> + <TD align="right">Draw Lines:</TD> + <TD> + <Input type="radio" name="splines" value="yes" %s>curved + <Input type="radio" name="splines" value="no" %s>straight + </TD> + </TR> + + <TR> + <TD align="right">Display Correlations:</TD> + <TD> + <Input type="radio" name="dispcorr" value="no" %s>no + <Input type="radio" name="dispcorr" value="yes" %s>yes + </TD> + </tr> + + <tr> + <td align="right">Line Font:</td> + <TD> + <select name='cfont'> + <option value='Arial' %s>Arial</option> + <option value='Verdana' %s>Verdana</option> + <option value='Times' %s>Times</option> + </select> + </TD> + </TR> + + <TR> + <TD align="right" nowrap="nowrap">Line Font Size:</TD> + <TD><input size="5" name="cfontsize" value="%s"> point</TD> + </TR> + + <tr><td align='center' colspan='2'><hr size='1'></td></tr> + + <TR><TD colspan = 2> + + <Input type=hidden name=cPubName value="%s"> + <Input type=hidden name=cMicName value="%s"> + <Input type=hidden name=cGenName value="%s"> + + <Input type=hidden name=cPubColor value="%s"> + <Input type=hidden name=cMicColor value="%s"> + <Input type=hidden name=cGenColor value="%s"> + + <Input type=hidden name=cL1Name value="%s"> + <Input type=hidden name=cL2Name value="%s"> + <Input type=hidden name=cL3Name value="%s"> + <Input type=hidden name=cL4Name value="%s"> + <Input type=hidden name=cL5Name value="%s"> + <Input type=hidden name=cL6Name value="%s"> + + <Input type=hidden name=cL1Color value="%s"> + <Input type=hidden name=cL2Color value="%s"> + <Input type=hidden name=cL3Color value="%s"> + <Input type=hidden name=cL4Color value="%s"> + <Input type=hidden name=cL5Color value="%s"> + <Input type=hidden name=cL6Color value="%s"> + + <Input type=hidden id=initThreshold value="0.5"> + + <Table CellSpacing = 3> + <tr> + <TD><Input type=radio name=colorS value="cPub"> Publish </TD> + <Td bgcolor="%s" ID="cPub" width=20 height=10></td> + <TD><Input type=radio name=colorS value="cMic"> Microarray </TD> + <Td bgcolor="%s" ID="cMic" width=20 height=10></td> + <TD><Input type=radio name=colorS value="cGen"> Genotype </TD> + <Td bgcolor="%s" ID="cGen" width=20 height=10></td> + </tr> + </table> + + </td></tr> + + <tr><td align='center' colspan='2'><hr size='1'></td></tr> + + <tr> + <td colspan='2' align='center'> + <img NAME="colorPanel" src="/images/colorPanel.png" alt="colorPanel" onClick="clickHandler(event, this);"> + </TD> + </TR> + + <tr><td align='center' colspan='2'><hr size='1'></td></tr> + + <tr><td align='center' colspan='2'><input type="submit" name="mintmap" value=" Redraw Graph " class="button" onClick="return sortSearchResults(this.form);"/></td></tr> + + </TABLE> + </form></TD> + <SCRIPT type="text/javascript" SRC="/javascript/networkGraph.js"></SCRIPT> + ''' % (selectedgType[0], selectedgType[1], selectedgType[2], selectedgType[3], selectedgType[4], + selectedLock[0], selectedLock[1], + p["cL1Color"], + selectedL1style[0], selectedL1style[1], selectedL1style[2], selectedL1style[3], selectedL1style[4], + p["cL2Color"], + selectedL2style[0], selectedL2style[1], selectedL2style[2], selectedL2style[3], selectedL2style[4], + p["cL3Color"], + selectedL3style[0], selectedL3style[1], selectedL3style[2], selectedL3style[3], selectedL3style[4], + p["cL4Color"], + selectedL4style[0], selectedL4style[1], selectedL4style[2], selectedL4style[3], selectedL4style[4], + p["cL5Color"], + selectedL5style[0], selectedL5style[1], selectedL5style[2], selectedL5style[3], selectedL5style[4], + p["cL6Color"], + selectedL6style[0], selectedL6style[1], selectedL6style[2], selectedL6style[3], selectedL6style[4], + selected[0], selected[1], selected[2], selected[3], + p["kValue"], + selected4[1], selected4[0], + selected5[0], selected5[1], + selected7[0], selected7[1], + nfontSelected[0], nfontSelected[1], nfontSelected[2], + p["nfontsize"], + selected3[0], selected3[1], + selected6[1], selected6[0], + cfontSelected[0], cfontSelected[1], cfontSelected[2], + p["cfontsize"], + p["cPubName"], p["cMicName"], p["cGenName"], + p["cPubColor"], p["cMicColor"], p["cGenColor"], + p["cL1Name"], p["cL2Name"], p["cL3Name"], p["cL4Name"], p["cL5Name"], p["cL6Name"], + p["cL1Color"], p["cL2Color"], p["cL3Color"], p["cL4Color"], p["cL5Color"], p["cL6Color"], + p["cPubColor"], p["cMicColor"], p["cGenColor"]) + + #updated by NL 09-03-2010 function changeFormat() has been moved to webqtl.js and be changed to changeFormat(graphName) + #Javascript that selects the correct graph export file given what the user selects + #from the two drop-down menus + + body += ''' <td width='10'> </td> + <TD valign="top"><p>Right-click or control-click on the following + links to download this graph as a <a href="%s" class="normalsize" target="_blank">GIF file</a> or + a <a href="%s" class="normalsize" target="_blank">PDF file</a>.</p> ''' % (imageName, pdfName) + + body += ''' <p>Initial edge lengths were computed by applying an r-to-Z transform to the correlation coefficents + and then inverting the results. The graph drawing algorithm + found a configuration that minimizes the total stretching of the edges.</p> ''' + + body += ''' <p>This graph took %s seconds to generate with the <a href="http://www.research.att.com/sw/tools/graphviz/" class="normalsize" target="_blank"> + GraphViz</a> visualization toolkit from <a href="http://www.research.att.com" class="normalsize" target="_blank">AT&T Research</a>.</p>''' % (round(totalTime, 2)) + + #Form to export graph file as either XGMML (standardized graphing format) or a + #plain text file with trait names/symbols and correlations + + body += ''' + <form name="graphExport"> + <p>Export Graph File:</p> + <p><select name='exportFormat' id='exportFormat' onchange='changeFormat("%s")'> + <option value='plain' %s>Plain Text Format</option> + <option value='xgmml' %s>XGMML Format</option> + </select> +       + <select name='traitType' id='traitType' onchange='changeFormat("%s")'> + <option value='symbol' %s>Trait Symbol</option> + <option value='name' %s>Full Trait Name</option> + </select></p> + + <p> + <input type="button" class="button" name="exportGraphFile" value=" Export Graph File "/> + </p> + </form> + ''' % (graphName, selectedExportFormat[0], selectedExportFormat[1], + graphName, selectedTraitType[0], selectedTraitType[1]) + + body += '''</Blockquote></td> + </TR></TABLE> + <form method="get" action="http://www.google.com/search"> + <input type="text" name="q" size="31" maxlength="255" value="" /> + <input type="submit" value="Google Search" /> + <input type="radio" name="sitesearch" value="" /> The Web + <input type="radio" name="sitesearch" value="genenetwork.org" checked /> GeneNetwork <br /> + </form> + ''' + + + self.dict["body"] = body + + def writeToFile(self, filename): + """ + Output the contents of this HTML page to a file. + """ + handle = open(filename, "w") + handle.write(str(self)) + handle.close() |